View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_12 (Length: 645)
Name: NF9266_low_12
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 15 - 632
Target Start/End: Complemental strand, 24809761 - 24809145
Alignment:
| Q |
15 |
tcaattatgaaggaaaagagaaattggagaagtagtccattttatgcaccctttggaggaggtgctagattttgtcctggagctgagctagctcgccttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809761 |
tcaattatgaaggaaaagagaaattggagaagtagtccattttatgcaccctttggaggaggtgctagattttgtcctggagctgagctagctcgccttc |
24809662 |
T |
|
| Q |
115 |
aaattgctctttttcttcattactttgttacaaactataggtaatgcctctctctccctccctcttgaccatagcagacctacgaagcacaaacacagac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| |
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| T |
24809661 |
aaattgctctttttcttcattactttgttacaaactataggtaatgcctctctctccctccctcttgaccatagcatacctatgaagaacaaacacggac |
24809562 |
T |
|
| Q |
215 |
accaa-acac-gacatggatactgataatttgagaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaa |
312 |
Q |
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|| | || | ||||| | || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809561 |
actgatacgccgacatcgcta---ataatttgaaaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaa |
24809465 |
T |
|
| Q |
313 |
caaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809464 |
caaatgaaggaagataggatgtccttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaact |
24809365 |
T |
|
| Q |
413 |
gaaacatatgtcaccatgttcatctcaactannnnnnnagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccac |
512 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809364 |
gaaacatatgtcaccatgttcatctcaactatttttttagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccac |
24809265 |
T |
|
| Q |
513 |
aacaattatgtatgtgtttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809264 |
aacaattatgtatgtgtttcagagtttatattatgttttcatgtatacatataattacatgttcatttactcatgtaagggttttatacttgtattgtat |
24809165 |
T |
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| Q |
613 |
aatgtatagtatagtataat |
632 |
Q |
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|||||||||||||||||||| |
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| T |
24809164 |
aatgtatagtatagtataat |
24809145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
256 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
322 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
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