View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_14 (Length: 600)
Name: NF9266_low_14
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 587
Target Start/End: Original strand, 7325672 - 7326239
Alignment:
| Q |
22 |
ttaagcatgagacctattagttgtcaggagagagtccttatatggtgactcgttatttaataaggacttattttttctttcttcaatagaaggtccttta |
121 |
Q |
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| T |
7325672 |
ttaagcatgagacctattagttgtcaggagagagtccttatatggtgactcgttatttaataaggacttattttttcttccttcaatagaaagtccttta |
7325771 |
T |
|
| Q |
122 |
agggaagtgatccttgttaaataaagaccccattaaaatgctctaataatctaaattatggttggattcaatgtagcataacaacagcaacactaacaat |
221 |
Q |
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| T |
7325772 |
tggaaagtgatccttgttaaataaagaccccattaaaatgttctaataatctaaattatggttggattcaatgtagcataacaacagcaacactaacaat |
7325871 |
T |
|
| Q |
222 |
ggtttgggttttagttgctaactatgtgaaatccattccatatagtggagtcaaaggttcaaggat-aaggtgggttttgtttctagttggataataatg |
320 |
Q |
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| T |
7325872 |
ggtttgggttttagttgctaactatgtgaaatccattccatatagtggagtcaaaggttcaaggataaaggtgggttttgtttctagttggataataatg |
7325971 |
T |
|
| Q |
321 |
gattaaaattacattggtgtacttcttaattatttttcttttaagggaaaattacattggtgtattagctattatacaaaaagtgttatgattgtaccc- |
419 |
Q |
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| T |
7325972 |
gattaaaattacattggtgtacttcttaattatttttcttttaagggaaaattacattggtgtattagctattatacaaaaagtgttatgattgtaccca |
7326071 |
T |
|
| Q |
420 |
nnnnnnnngtattatgaacactaacnnnnnnnnnaaaaatcggatattatgaacactaaccgcaaaattaattcttaagttggacataactataatgaat |
519 |
Q |
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| T |
7326072 |
aaataaaagtattatgaacaataactttttttttttaaatcggatattatgaacactaaccacaaaattaattcttaagttggacataactataatgaat |
7326171 |
T |
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| Q |
520 |
gacaaaaattttcttaaaaagatttaagtatgttgcatttgtggggccttctcaatatgtgaacacca |
587 |
Q |
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| T |
7326172 |
gacaaaacttttcttaaaaatatttaagtatgttgcatttgtggggccttctcaatatgtgaacacca |
7326239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 13282016 - 13281913
Alignment:
| Q |
49 |
gagagagtccttatatggtgactcgttatttaataaggacttattttttctttcttcaatagaaggtcctttaagggaagtgatccttgttaaataaaga |
148 |
Q |
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||||||||||||||| ||||||| || ||||||| |||| |||||||||| ||||||||| |||||||| | || ||| || |||||||| ||| || |
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| T |
13282016 |
gagagagtccttatagagtgactcattccttaataatgactcattttttcttccttcaataggaggtccttaacagggagtaattcttgttaagtaagga |
13281917 |
T |
|
| Q |
149 |
cccc |
152 |
Q |
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|||| |
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| T |
13281916 |
cccc |
13281913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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