View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_16 (Length: 562)
Name: NF9266_low_16
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 42349765 - 42349237
Alignment:
| Q |
11 |
attatactatactgcgtgaatttgttttgccttttttgc----ctggtgacagatttgcatgaattataacttataagtcgtcttgcatctcannnnnnn |
106 |
Q |
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| T |
42349765 |
attatactatactgcgtgaatttgttttgccttttttgcttgcctggtgacagatttgcatgaattataagtt-------gtcttgcatctcatttt--- |
42349676 |
T |
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| Q |
107 |
attatattatatcttataacaatcttatagaaaaagtatcatatcccaactccatgacccttcctctcaaactcttcacaaaaatgctactatttggtgg |
206 |
Q |
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| T |
42349675 |
-ttttgttatat--tata----tcttatagaaaaagtatcatatcccaactccataacccttcctctcaaactcttcacaaaaatgctactatttggtgg |
42349583 |
T |
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| Q |
207 |
aaagacttgtgtgaacttgggaagagaggggaagatcaaaatcggttcttcgagtttgtaaagnnnnnnnntaggcaatgacgatcataccaaattttag |
306 |
Q |
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| T |
42349582 |
aaagacttgtgtgaacttgggaagagaggg-aagatcaaaatcggttc---gagtttgtaaagaaaaaaa-taggcaatgacgatcataccaaattttgg |
42349488 |
T |
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| Q |
307 |
gatgatgtttagttaatgaacaaggcgcttag-------tttccaatgttattttccttgtctgtctgaaaatattgtagcattagtgagatgtgatccg |
399 |
Q |
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| T |
42349487 |
gatgatgtttggttgatgaacaaggcgcttagaaaagtctttccaatattattttccttgtctgtccgaaaatcttgtagcattagtgagatgtgatccg |
42349388 |
T |
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| Q |
400 |
tgggggaaaggacgtcgagttgggatttcaagtggtgggagaatttctttaaatg-ggaaaaaatatttattccaagagctatggggccgcattga-ggg |
497 |
Q |
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| T |
42349387 |
tgggggaaaggtcatcgagttgggatttcaagtggtggaagaatttctttaaatgagaaaaaaatatttattccaagagttatggggctgcattgacggg |
42349288 |
T |
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| Q |
498 |
gtctttaattggccttgaagatga-ccattgggtttgggtgcttgactatt |
547 |
Q |
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| T |
42349287 |
gtttttaattgaccctgaagatgacccattgggtttgggtgcttgactatt |
42349237 |
T |
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