View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_18 (Length: 529)
Name: NF9266_low_18
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 15 - 519
Target Start/End: Complemental strand, 14336 - 13832
Alignment:
| Q |
15 |
gctacatcgtaactagtgtcctgtgaaacgcaattcagtaaattgttctcaaattgcggctatggcagcaccgtagcatggagaaatttgaaccagttgc |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14336 |
gctacatcgtaactagtgtcctgtgaaacacaattcagtaaattgttctcaaattgcggctatggcagcaccgtagcatggagaaatttgaaccagttgc |
14237 |
T |
|
| Q |
115 |
tactttccgcgattcgcaattcacagcacttgataatgagcagctgccattagtttgctatcttctgtaaacataataataatctcaatcctcctcagtc |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14236 |
tactttccgcgattcgcaattcacagcacttgataatgagcagctgccattagtttgctatcttctgtaaacataataataatctcaatcctcctcagtc |
14137 |
T |
|
| Q |
215 |
atgcaaaaaatgtcaataattcaattgttatccatactgagtatcaaacgagcttttaacgaacaagatccacaaggaagaatcacggatcctggtaaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14136 |
atgcaaaaaatgtcaataattcaattgttatccatactgagtatcaaacgagcttttaacgaacaagatccacaaggaagaatcacggatcctggtaaag |
14037 |
T |
|
| Q |
315 |
tatcaccattgagtatagatatactatttccatttctcaataaggaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14036 |
tatcaccattgagtatagatatactatttccatttctcaataaggaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcg |
13937 |
T |
|
| Q |
415 |
acattgataaaacagttctaatgcttcatcggcatcttcaactgtcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgcctt |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13936 |
acattgataaaacagttctaatgcttcatcggcatcttcaactgtcatatcatgaaagcttaaatcttctgcgacttcggcagccaatgcatcacgcctt |
13837 |
T |
|
| Q |
515 |
gatct |
519 |
Q |
| |
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||||| |
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|
| T |
13836 |
gatct |
13832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 15 - 519
Target Start/End: Complemental strand, 879351 - 878847
Alignment:
| Q |
15 |
gctacatcgtaactagtgtcctgtgaaacgcaattcagtaaattgttctcaaattgcggctatggcagcaccgtagcatggagaaatttgaaccagttgc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
879351 |
gctacatcgtaactagtgtcctgtgaaacgcaattcagtaaattgttctcaaattgcggctatggcagcatcgtagcatggagaaatttgaaccagttac |
879252 |
T |
|
| Q |
115 |
tactttccgcgattcgcaattcacagcacttgataatgagcagctgccattagtttgctatcttctgtaaacataataataatctcaatcctcctcagtc |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
879251 |
tactttccgcgattcgcaattcacagcacttgataatgagcagctgccattagtttgctatcttctgtaaacataataataatctcaatcctcctcagtc |
879152 |
T |
|
| Q |
215 |
atgcaaaaaatgtcaataattcaattgttatccatactgagtatcaaacgagcttttaacgaacaagatccacaaggaagaatcacggatcctggtaaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
879151 |
atgcaaaaaatgtcaataattcaattgttatccatactgagtatcaaacgagcttttaacgaacaagatccacaaggaagaatcacggatcctggtaaag |
879052 |
T |
|
| Q |
315 |
tatcaccattgagtatagatatactatttccatttctcaataaggaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
879051 |
tatcaccattgagtatagatatactatttccatttctcaataaggaataccccattttcaacaattccaatgagtcgacggagaagtaatcaccacatcg |
878952 |
T |
|
| Q |
415 |
acattgataaaacagttctaatgcttcatcggcatcttcaactgtcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgcctt |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
878951 |
acattgataaaacagttctaatgcttcatcggcatcttcaactgtcatatcatgtaagcttaaatcttctgcgacttcggcagccaatgcatcacgcctt |
878852 |
T |
|
| Q |
515 |
gatct |
519 |
Q |
| |
|
||||| |
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|
| T |
878851 |
gatct |
878847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 213 - 501
Target Start/End: Complemental strand, 28408077 - 28407782
Alignment:
| Q |
213 |
tcatgcaaaaaatgtcaataatt-caattgttatccatactgagtatcaaacgagcttttaacgaacaagatccacaaggaagaatcacggatcctggta |
311 |
Q |
| |
|
|||||| |||||| | ||||||| ||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
28408077 |
tcatgccaaaaatatgaataatttcaattgttatccatactaagtacaagacgagctttcaacgaacaagatccacaaggaagaatcactgatcctggtg |
28407978 |
T |
|
| Q |
312 |
aagtatcaccattgagtatagatatacta------tttccatttctcaataaggaataccccattttcaacaattccaatgagtcgacggagaagtaatc |
405 |
Q |
| |
|
|||||||| || | |||||||| || || ||||||| |||||| |||||||||||||||||| |||||||||||||||| || ||||||||||| |
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|
| T |
28407977 |
aagtatcaacaataagtatagaaatgctgatgctgtttccatctctcaacaaggaataccccattttctacaattccaatgagtctacagagaagtaatc |
28407878 |
T |
|
| Q |
406 |
accacatcgacattgataaaacagttctaatgcttcatcggcatcttcaactgtcatatcatgtaagcttaaatcttctgcgacttcggcagccaa |
501 |
Q |
| |
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|||||||||||| |||||||||| ||| |||| |||| | ||||||||||| |||||||| ||||| ||||| |||||||| ||||| | |||||| |
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| T |
28407877 |
accacatcgacactgataaaacaattccaatgtttcaccagcatcttcaacagtcatatcctgtaaccttaactcttctgcaacttcagaagccaa |
28407782 |
T |
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