View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_19 (Length: 498)
Name: NF9266_low_19
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 5921182 - 5920713
Alignment:
| Q |
20 |
ctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
119 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5921182 |
ctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatc |
5921083 |
T |
|
| Q |
120 |
acaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatc |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5921082 |
acaaggacgtggtaaaggttct--tttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatc |
5920985 |
T |
|
| Q |
220 |
aaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggg |
319 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5920984 |
aaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggg |
5920885 |
T |
|
| Q |
320 |
gggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatctctccc |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
5920884 |
gggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatctctccc |
5920785 |
T |
|
| Q |
419 |
ttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
490 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
5920784 |
ttctacttcaaattccaccaccaaccatatccaagtcactccttttgtttctactagcatctctgctactcc |
5920713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
343 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
400 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
174 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
229 |
Q |
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||||| |||| | |||||| |||||| || |||||||||||||||||||||||||| |
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| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 20325484 - 20325022
Alignment:
| Q |
20 |
ctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20325484 |
ctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
20325385 |
T |
|
| Q |
120 |
acaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatc |
219 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
20325384 |
ccaaggacgtggtaaaggtt-----ttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatc |
20325290 |
T |
|
| Q |
220 |
aaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggg |
319 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20325289 |
aactacatggtcatcctagttttcctaagcaacaatctaaagtgactgc---ttctcatgagatccctgatgaaaatggtgcattggatcatggtttggg |
20325193 |
T |
|
| Q |
320 |
gggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggtttcctcatcatctctccct |
419 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||| ||| |
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| T |
20325192 |
gggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatctcctcct |
20325093 |
T |
|
| Q |
420 |
tctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
490 |
Q |
| |
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||||||||||||| |||||||| ||||||||| ||||||||||||||| | || ||| ||||||||||| |
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| T |
20325092 |
cctacttcaaatgctaccaccaatcatgtccaaaccactccttttgtttccaataacatttctgcttctcc |
20325022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
180 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
229 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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