View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_21 (Length: 478)
Name: NF9266_low_21
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 17725451 - 17724997
Alignment:
| Q |
11 |
tttggtgttcactcatagataatttattatctacaataattcagcaataaagttttcaattcattaactttcaagaattgaggccaatgaaagtttaggg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17725451 |
tttggtgttcactcatagataatttattatctacaataattcagcaataaagttttcaattcattaactttcaagaattgaggccaatgaaagattaggg |
17725352 |
T |
|
| Q |
111 |
aaacaaagaaaatgaggtatcacagtcaaatttatcaacagaatatcaattcagatgacagccttgcatgaatgcaatttatttataagcatttgtgtag |
210 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
17725351 |
aaacaaagaaaacgacgtatcacagtcaaatttatcaactgaatatcaattcagatgacagccttgcatgaatgcaatttgtttataagcgtttgtgtag |
17725252 |
T |
|
| Q |
211 |
aaattgtgttacaatattatggagttcggccaaccatgcctacatgttcgacaataaagtatctgttactcttttctattctacactggattgtgctcct |
310 |
Q |
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| T |
17725251 |
aaattgtgttacaatattacggagttcggccaaccatgcctacatgttcgacaataaagtatctgttactcttttctattctacactggattgtgctcct |
17725152 |
T |
|
| Q |
311 |
ctcactttgctatgctaccc--tagattgcatctgtccacttattaggaaatatgaactataatcaagattttgcttcctcgaaatctaaaatatgatat |
408 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17725151 |
ctcactttgctatgctaccctataaattgcatctgtccacttattaggaaatatgaactataatcaagattttgcttcctcgaaatctaaaatatgttat |
17725052 |
T |
|
| Q |
409 |
gtgaagatgttacctgaattgatttgcaattataagaaataacaaatattgttat |
463 |
Q |
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| T |
17725051 |
gtgaagatgtcacctgaattgatttgcaattataagaaataaccaatattgttat |
17724997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 19026680 - 19026226
Alignment:
| Q |
11 |
tttggtgttcactcatagataatttattatctacaataattcagcaataaagttttcaattcattaactttcaagaattgaggccaatgaaagtttaggg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19026680 |
tttggtgttcactcatagataatttattatctacaataattcagcaataaagttttcaattcattaactttcaagaattgaggccaatgaaagattaggg |
19026581 |
T |
|
| Q |
111 |
aaacaaagaaaatgaggtatcacagtcaaatttatcaacagaatatcaattcagatgacagccttgcatgaatgcaatttatttataagcatttgtgtag |
210 |
Q |
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| T |
19026580 |
aaacaaagaaaacgacgtatcacagtcaaatttatcaactgaatatcaattcagatgacagccttgcatgaatgcaatttgtttataagcgtttgtgtag |
19026481 |
T |
|
| Q |
211 |
aaattgtgttacaatattatggagttcggccaaccatgcctacatgttcgacaataaagtatctgttactcttttctattctacactggattgtgctcct |
310 |
Q |
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| T |
19026480 |
aaattgtgttacaatattacggagttcggccaaccatgcctacatgttcgacaataaagtatctgttactcttttctattctacactggattgtgctcct |
19026381 |
T |
|
| Q |
311 |
ctcactttgctatgctaccc--tagattgcatctgtccacttattaggaaatatgaactataatcaagattttgcttcctcgaaatctaaaatatgatat |
408 |
Q |
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|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19026380 |
ctcactttgctatgctaccctataaattgcatctgtccacttattaggaaatatgaactataatcaagattttgcttcctcgaaatctaaaatatgttat |
19026281 |
T |
|
| Q |
409 |
gtgaagatgttacctgaattgatttgcaattataagaaataacaaatattgttat |
463 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19026280 |
gtgaagatgtcacctgaattgatttgcaattataagaaataaccaatattgttat |
19026226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 447
Target Start/End: Original strand, 19402987 - 19403135
Alignment:
| Q |
299 |
gattgtgctcctctcactttgctatgctaccctagattgcatctgtccacttattaggaaatatgaactataatcaagattttgcttcctcgaaatctaa |
398 |
Q |
| |
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|||| |||||||||| ||||| ||||||| |||||||||| ||| |||||||||||| ||||||| |||||||||| | |||||||| || ||||||| |
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| T |
19402987 |
gattctgctcctctcgatttgcaatgctacgctagattgcagctgaccacttattagggaatatgagctataatcaacagtttgcttcatccaaatctac |
19403086 |
T |
|
| Q |
399 |
aatatgatatgtgaagatgttacctgaattgatttgcaattataagaaa |
447 |
Q |
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||| || | |||||||| || | || | |||||||||||| |||||||| |
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| T |
19403087 |
aatgtgttttgtgaagaagtcatcttatttgatttgcaataataagaaa |
19403135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 365
Target Start/End: Original strand, 19458961 - 19459129
Alignment:
| Q |
202 |
tttgtgtagaaattgtgttacaata-----ttatggagttcggccaaccatgcctacatgttcgacaataaagtatctgttactcttttctattctacac |
296 |
Q |
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|
||||||||||||||||||||||||| ||| |||||||||| || || ||||||||||||| || ||||||| |||||||||||||| | || |
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| T |
19458961 |
tttgtgtagaaattgtgttacaatagttgattacggagttcggctaaatgcgcgtacatgttcgacatgaatgtatctgctactcttttctattatgcaa |
19459060 |
T |
|
| Q |
297 |
tggattgtgctcctctcactttgctatgctaccctagattgcatctgtccacttattaggaaatatgaa |
365 |
Q |
| |
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| T |
19459061 |
tgaatttttctcctctagctttgctatgctaagctagattgcgcgtgtccccttattagagaatatgaa |
19459129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 18100687 - 18100747
Alignment:
| Q |
377 |
attttgcttcctcgaaatctaaaatatgatatgtgaagatgttacctgaattgatttgcaa |
437 |
Q |
| |
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||||||||||||| ||||||| |||||| ||||||||||||| | ||||||||||||||| |
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| T |
18100687 |
attttgcttcctccaaatctacaatatgttatgtgaagatgtcatatgaattgatttgcaa |
18100747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Original strand, 18096481 - 18096514
Alignment:
| Q |
366 |
ctataatcaagattttgcttcctcgaaatctaaa |
399 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
18096481 |
ctataatcaacattttgcttcctcgaaatctaaa |
18096514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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