View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_26 (Length: 440)
Name: NF9266_low_26
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_26 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 8004721 - 8004300
Alignment:
| Q |
19 |
ataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004721 |
ataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatca |
8004622 |
T |
|
| Q |
119 |
agatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttt |
218 |
Q |
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| T |
8004621 |
agatgctgcaacagtgattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttt |
8004522 |
T |
|
| Q |
219 |
taaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
8004521 |
taaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatcccggtaagcaatgattgtggacagtttgcagtac |
8004422 |
T |
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| Q |
319 |
aattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttatttgcctg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
8004421 |
aattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatg |
8004322 |
T |
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| Q |
419 |
aagaataaacctcttaatgact |
440 |
Q |
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| T |
8004321 |
aagaataaacctcttaatgact |
8004300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 160 - 440
Target Start/End: Original strand, 7900522 - 7900806
Alignment:
| Q |
160 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
256 |
Q |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
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| Q |
257 |
gacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaatt-aattgaaggttgaccctcataaacgataacttt |
355 |
Q |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataacttt |
7900721 |
T |
|
| Q |
356 |
gtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttatttgcctgaagaataaacctcttaatgact |
440 |
Q |
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| T |
7900722 |
gtcagcaagataatttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgact |
7900806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 178 - 440
Target Start/End: Complemental strand, 51518882 - 51518620
Alignment:
| Q |
178 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
277 |
Q |
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|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
278 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
377 |
Q |
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| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatg |
51518683 |
T |
|
| Q |
378 |
atgaaatcatgctcaacgataaaggctgttttatttgcctgaagaataaacctcttaatgact |
440 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
51518682 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttgatgact |
51518620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 51519014 - 51518878
Alignment:
| Q |
19 |
ataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatca |
118 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51519014 |
ataataagagccagcattcttttgctctctgtcctttgttgattcaagtttgttgatccttgggcggaaattagttgggtctcttctaaatgtgatatca |
51518915 |
T |
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| Q |
119 |
agatgctgcaacagtaattagattagacatatcatac |
155 |
Q |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
51518914 |
agatgctgcaacagtgattagattagacatatcatac |
51518878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 1300138 - 1300545
Alignment:
| Q |
19 |
ataataagacccagcattcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatca |
118 |
Q |
| |
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|||||||| ||||||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
1300138 |
ataataagtcccagcaagcttttgctctctatccttggttgaatcaagtttgttgatccttgggcggaaattagttggatctcttctaaatgtgatatca |
1300237 |
T |
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| Q |
119 |
agatgctgcaacagtaattagattagacatatcatacgaacaagtaccaccagag-agaacataattttttaattttaacgtgtgtgataccctga--at |
215 |
Q |
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|||||||||||| | |||| ||||||||| | ||| | |||||||||| |||| | |||||||||||| ||||||||| || |||||| | || |
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| T |
1300238 |
agatgctgcaacgattattacattagacatttattacaagcaagtaccacgagagcaaaacataatttttaaattttaacatgcatgatacttcaattat |
1300337 |
T |
|
| Q |
216 |
ttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcag |
315 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||||||| |
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| T |
1300338 |
ttttaaaa----------taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgattgtggagaatttgcag |
1300427 |
T |
|
| Q |
316 |
tacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttatttgc |
415 |
Q |
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|||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
1300428 |
tacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatgatgaaatcatgctcaaccacaaaggctgttttctttgc |
1300527 |
T |
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| Q |
416 |
ctgaagaataaacctctt |
433 |
Q |
| |
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||||||||||||||||| |
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| T |
1300528 |
atgaagaataaacctctt |
1300545 |
T |
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