View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_29 (Length: 425)
Name: NF9266_low_29
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 10146522 - 10146114
Alignment:
| Q |
1 |
agcaactagaaaatgacggatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10146522 |
agcaactagaaaatgacggatgagaccattccagtgattgatattgagaagatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaat |
10146423 |
T |
|
| Q |
101 |
ggggttgttttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10146422 |
ggggttgttttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaa |
10146323 |
T |
|
| Q |
201 |
gaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10146322 |
gaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatggatgcttca |
10146223 |
T |
|
| Q |
301 |
caagctatgcatgatttctgctcgcaactgaatgtcacacctcaccagaggtatgccacacttnnnnnnnnngattgaagaagagagaattttgtattaa |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10146222 |
taagctatgcatgatttctgctctcaactgaatgtcacacctcaccagaggtatgccacacttaaaaaaaaagattgaagaagagagaattttgtattaa |
10146123 |
T |
|
| Q |
401 |
ttaaaatac |
409 |
Q |
| |
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||||||||| |
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| T |
10146122 |
ttaaaatac |
10146114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 355
Target Start/End: Complemental strand, 10141483 - 10141156
Alignment:
| Q |
28 |
attccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatcattaaccact |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
10141483 |
attccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatgcatgtgaaagatggggttgtttcagaatcattaaccact |
10141384 |
T |
|
| Q |
128 |
ccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctgg |
227 |
Q |
| |
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| ||||||||| | ||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||| |
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| T |
10141383 |
ctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcctgg |
10141284 |
T |
|
| Q |
228 |
aaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatgcatgatttctgctcgcaa |
327 |
Q |
| |
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||| |||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||| |
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| T |
10141283 |
aagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgctctcaa |
10141184 |
T |
|
| Q |
328 |
ctgaatgtcacacctcaccagaggtatg |
355 |
Q |
| |
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||||||| |||||| |||||||||||| |
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| T |
10141183 |
ctgaatgctacaccttaccagaggtatg |
10141156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 10089865 - 10089519
Alignment:
| Q |
10 |
aaaatgacggatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgtt |
109 |
Q |
| |
|
|||||||||| |||||| |||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
10089865 |
aaaatgacgggtgagaccattccatacattgatcttgagaagatttcagagcaattcgagtgcaacaagttaagaaatgcatgtgaaaaatggggttgtt |
10089766 |
T |
|
| Q |
110 |
ttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaa |
209 |
Q |
| |
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| |||||||||||||| || ||||||||||| ||||||| ||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
10089765 |
tcaggatcattaaccattctattcctttgacccttatggatgagatgaaaatggttgttgtagctcttcacgaccttcctatggatatcaagaaaaacaa |
10089666 |
T |
|
| Q |
210 |
caaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatg |
309 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||| ||| ||||| || |||||||| ||||||||||||| |||||| |||| |||||||| |
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|
| T |
10089665 |
taaagatgtcattcctggaagtggttactttggaccaagtgtttttaaccctctcatagaatctgtcggcctctatgatatgggttcttcgcaagctata |
10089566 |
T |
|
| Q |
310 |
catgatttctgctcgcaactgaatgtcacacctcaccagaggtatgc |
356 |
Q |
| |
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|| ||||||||||| ||| |||||| |||||||| ||||||||||| |
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| T |
10089565 |
caagatttctgctctcaattgaatgctacacctcatcagaggtatgc |
10089519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 11300877 - 11301223
Alignment:
| Q |
10 |
aaaatgacggatgagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgtt |
109 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
11300877 |
aaaatgacgggtgagactattccgttcattgatcttgagaagattttagagcaattcgagtgcaagaagttaagagatgcatgtgaaaaatggggttgtt |
11300976 |
T |
|
| Q |
110 |
ttaggatcattaaccactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaa |
209 |
Q |
| |
|
||||||| || ||||| || ||||||||||| ||||||| ||| |||| ||| |||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11300977 |
ttaggattatcaaccattctattcctttgacccttatggatgagatgaaaatagttgttatagctcttcatgaccttcctatggataggaagaaaaacaa |
11301076 |
T |
|
| Q |
210 |
caaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatg |
309 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||| || ||| ||||| | |||||||| | ||||||||||| |||||| ||||||||||||| |
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| T |
11301077 |
taaagatgtcattcctggaagtggttactttggaccaactgtttttaaccctgtcatagaatctcttggcctctatgatatgggttcttcacaagctata |
11301176 |
T |
|
| Q |
310 |
catgatttctgctcgcaactgaatgtcacacctcaccagaggtatgc |
356 |
Q |
| |
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|| |||||||||| ||| |||||| |||||||| ||||||||||| |
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|
| T |
11301177 |
caatatttctgctctcaattgaatgctacacctcatcagaggtatgc |
11301223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 10153110 - 10152788
Alignment:
| Q |
22 |
gagactattccagtgattgatattgagaaaatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatcatta |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| ||| ||| |||| ||||||| |||||||||| |||||||||||| || ||||| | |
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|
| T |
10153110 |
gagactattccagtgattgatcttgagaagatttcagagcaatccgaatgccaaaaactaagagaagcatgtgaaagatggggttgtttcagaatcatca |
10153011 |
T |
|
| Q |
122 |
accactccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcat |
221 |
Q |
| |
|
||||||| ||||||| || |||||| |||| |||| || |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10153010 |
accactctattccttccacccttatgtctgatatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcat |
10152911 |
T |
|
| Q |
222 |
ttctggaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatgggtgcttcacaagctatgcatgatttctgc |
321 |
Q |
| |
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| |||| || |||||| | |||||||||||| | || || || | ||| |||| ||||||||||| | ||| ||||||||||| ||||||| |||||| |
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|
| T |
10152910 |
tgctggtagtggttacatggcaccaagtgctgtcaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgc |
10152811 |
T |
|
| Q |
322 |
tcgcaactgaatgtcacacctca |
344 |
Q |
| |
|
|| ||| |||||| ||||||||| |
|
|
| T |
10152810 |
tctcaattgaatgccacacctca |
10152788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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