View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_31 (Length: 391)
Name: NF9266_low_31
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7254319 - 7253949
Alignment:
| Q |
1 |
taaactttctcaactcttatgtattagattaatatttgttttgagagttttgcatacctaggatatagatataatatttagtttactattcattattgaa |
100 |
Q |
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| T |
7254319 |
taaactttctcaactcttatgtattagattaatatttgttttgagagttttgcatacgtaggatatagatataatatttagtttactattcattattgaa |
7254220 |
T |
|
| Q |
101 |
agtttgatcttttatataatctatcatgagactgtaaatctaaactcttccatgtttcctggaactgnnnnnnnnnnnnnnnnnngttctctgttttagt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7254219 |
agtttgatcttttatataatctatcatgggactgtaaatctaaactcttccatgtttcctggaactgttttttcttttactttt-gttctctgttttagt |
7254121 |
T |
|
| Q |
201 |
tgtggtttgaacatgaacctgtttctggttaagaaaatataacgtgtacgtataatgcagtgttgtcaatcacggaaaatagcggaaattctgccacact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
7254120 |
tgtggtttgaacatgaacctgtttctggttaagaaaatataacgtgtacgtataatgcagtgttgtcaatcacggaagatagtggaaattctgccacact |
7254021 |
T |
|
| Q |
301 |
acaatgttttagtgccatatacccgctatttgacaactttgtactaaatagcttatcaatttatcttggaat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7254020 |
acaatgttttagtgccatatacccgctatttgacaactttgtactaaatagcttatcaagttatcttggaat |
7253949 |
T |
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