View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_35 (Length: 375)
Name: NF9266_low_35
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 21055837 - 21056191
Alignment:
| Q |
5 |
gagacctgtgagagtaggagtcccacaatattgggtgnnnnnnnatgtatctggtttatttcttgctgctttatatatctaattttttatgccggcacta |
104 |
Q |
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| T |
21055837 |
gagacctgtgagagtaggagtcccacaatattgggtgttt----atgcatctggtttatttcttgctgctttatatatctaattttttatgccggcacta |
21055932 |
T |
|
| Q |
105 |
tatgatatttactcgcatttaccccatttctaatttccctatatgaatgatattatttggttgtgtgataatttgttttttgataagtcactgcattgga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055933 |
tatgatatttactcgcatttaccccatttctaatttccctatatgaatgatattatttggttgtgtgataatttgttttttgataagtcactgcattgga |
21056032 |
T |
|
| Q |
205 |
ctgtgaaacaacaatgtactccagtgatgcattgtatacctctatttttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtt |
304 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
21056033 |
ctgtgaaacaacaatgtgctccagtgatgcattgtatacctctatttttggagttgcggataagtttacttactggaagttgcattggagtgtttgagtt |
21056132 |
T |
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| Q |
305 |
taacttgacaatggcatgcttatagtaaagtagattagatatagaaaaagttgatgtcc |
363 |
Q |
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| T |
21056133 |
taacttgacaatggcatgcttattgtaaagtagattagatatagaaaaagttgatgtcc |
21056191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 364
Target Start/End: Complemental strand, 26366064 - 26365759
Alignment:
| Q |
52 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
151 |
Q |
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| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
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| Q |
152 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattt |
251 |
Q |
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|||| |||||| ||||||| |||||||||| |||||||||| ||| ||||| | |||| |||||||| | | ||||||||||||||||||||| ||| |
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| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtatacctct-ttt |
26365868 |
T |
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| Q |
252 |
ttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaa |
351 |
Q |
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|||| |||| || ||||||||||| || |||| ||| ||||||||| |||||| |||| |||||||||| ||||| ||| | |||| ||||||||| |
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| T |
26365867 |
ttgg-gttgttgacaagtttacttattggaagctgca---gagtgtttgggtttaatttgaaaatggcatgcctataggaaatttgattgaatatagaaa |
26365772 |
T |
|
| Q |
352 |
aagttgatgtcca |
364 |
Q |
| |
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|||||||| |||| |
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| T |
26365771 |
aagttgatatcca |
26365759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 364
Target Start/End: Complemental strand, 26363573 - 26363267
Alignment:
| Q |
55 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
153 |
Q |
| |
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|||||||| ||| ||||||||||| | ||| ||||||| |||| |||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||| |
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| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
|
| Q |
154 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattttt |
253 |
Q |
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||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||||||||||||||| | | |||| |||||| ||| |||| ||| | |
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| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatgcagtagtgtgaagcattgcatatctct-tttgt |
26363375 |
T |
|
| Q |
254 |
ggagttgcggataagtttactta-ctgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
352 |
Q |
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|| |||| || ||||||||||| | |||| ||| |||||| || ||||||||||| |||||||||||||||| ||| | |||| |||| ||||| |
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| T |
26363374 |
gg-gttgttgacaagtttacttatgggaaagctgca---gagtgtctgtgtttaacttgagaatggcatgcttataggaaatttgatttaatattgaaaa |
26363279 |
T |
|
| Q |
353 |
agttgatgtcca |
364 |
Q |
| |
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|||||||||||| |
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|
| T |
26363278 |
agttgatgtcca |
26363267 |
T |
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