View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9266_low_36 (Length: 374)

Name: NF9266_low_36

Description: NF9266

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9266_low_36

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 217; E-Value: 1e-119

Query Start/End: Original strand, 154 - 374

Target Start/End: Original strand, 24637587 - 24637807

Alignment:

Q	154	cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24637587	cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcagaacatgttttggagaaaacttatttgatgtcaat	24637686	T

Q	254	attgccattcgtaatcaggttaataccatttccaattatttagtttttctttattagaggaaatatgtataaacatgagcctaaagttctcagcagtaga	353	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24637687	attgccattcgtaatcaggttaataccatttccaattatttagtttttctttattagaggaaatatgtataaacatgagcctaaagttctcagcagtaga	24637786	T

Q	354	gagagacagttttatctttac	374	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24637787	gagagacagttttatctttac	24637807	T

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Target: chr3; HSP #2

Raw Score: 98; E-Value: 3e-48

Query Start/End: Original strand, 4 - 113

Target Start/End: Original strand, 24637437 - 24637546

Alignment:

Q	4	acgagcagaacctgtgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttga	103	Q
		\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24637437	acgagcagcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttga	24637536	T

Q	104	ttcctccgac	113	Q
		\|\|\|\|\|\|\|\|\|\|
T	24637537	ttcctccgac	24637546	T

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Target: chr3; HSP #3

Raw Score: 88; E-Value: 3e-42

Query Start/End: Original strand, 154 - 373

Target Start/End: Original strand, 24716218 - 24716436

Alignment:

Q	154	cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat	253	Q
		\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	24716218	cttctactcatgcacaaattttatgtgaaatatcacacccgaaatagatgtttttacaaacatcagaacatgttctggagaaagtttatttgatatcaat	24716317	T

Q	254	attgccattcgtaatcaggttaataccatt-tccaattatttag-tttttctttattagaggaaatatgtataaacatgagcctaaagttctcagcagta	351	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|
T	24716318	attgccattcgtaatcaggt---tgccattatcacatcatttagatttttctttattaacggaaagatgtaaaaacgtgagcctaaagttttcagcactt	24716414	T

Q	352	gagagagacagttttatcttta	373	Q
		\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	24716415	gaaagagataggtttatcttta	24716436	T

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Target: chr3; HSP #4

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 331 - 374

Target Start/End: Original strand, 24646699 - 24646742

Alignment:

Q	331	agcctaaagttctcagcagtagagagagacagttttatctttac	374	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	24646699	agcctaaagttctcagcagcagagagagacaggtttatctttac	24646742	T

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Target: chr3; HSP #5

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 49 - 110

Target Start/End: Original strand, 24716115 - 24716171

Alignment:

Q	49	aaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctcc	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	24716115	aaattatgtttcagattcctttcaatcat-----ttataggaaataacagattgattcctcc	24716171	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]