View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_43 (Length: 346)
Name: NF9266_low_43
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_43 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 34577095 - 34577419
Alignment:
| Q |
19 |
gcattatcaaagtgtgttgaagatgtattaaaagattgctactaagttcactgttaagcttccaattttgcgtcctgcaaggagagatgttgtcaaaagg |
118 |
Q |
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| T |
34577095 |
gcatcatcaaagtgtgttgaagatgtattaaaagattgctactaagttcactgctaagcttccaattttgcgtcctgcaaggagagatgttgtcaaaagg |
34577194 |
T |
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| Q |
119 |
cttattgatactaaaccttgcaagatgaaatctcaagaatattgtgatcttgagaaagaaacagtgtcttttctctagtagtttttctgctaataatgta |
218 |
Q |
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| T |
34577195 |
cttattgatactaaaccttgcaagatgaaatctcaagaat---gtgatcttgagaaagatatagtgtcttttctctagtagtttttctgctaataatgta |
34577291 |
T |
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| Q |
219 |
aattcttaaagatattttccaattgaaatgaactttggtagcctaattgcggtttattgtataataattatgtcttgagagttgttacaaatatataaca |
318 |
Q |
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| T |
34577292 |
aattcttaaagatattttccaattgaaatgaacttttgtagcctaattgcggtttattgtataataattatgtcttgagagttgttacaaatatataaca |
34577391 |
T |
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| Q |
319 |
tctaggtcatttttcttggttgtttttt |
346 |
Q |
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| T |
34577392 |
tctaggtcatttttcttggttgtttttt |
34577419 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 12061845 - 12061768
Alignment:
| Q |
73 |
taagcttccaattttgcgtcctgcaaggagagatgttgtcaaaaggcttattgatactaaaccttgcaagatgaaatc |
150 |
Q |
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| T |
12061845 |
taagcttccaactttgcgtccaactatgagagatgttgttaagatgcttgttgattctgaaccttgcaagaagaaatc |
12061768 |
T |
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