View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_44 (Length: 329)
Name: NF9266_low_44
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 35979679 - 35979978
Alignment:
| Q |
10 |
gaagcagagaaagacaaaccaaatgagtcggtagttatttacctcaaagttggtgaacagaaacttgttttgggaaccctgaccaaggacaaaattcctc |
109 |
Q |
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| T |
35979679 |
gaagcaaagaaagacaaaccaaacgagtctgtggttatttacctcaaagttggtgaacagaaacttgttttgggaaccctgaccaaggacaaaattcctc |
35979778 |
T |
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| Q |
110 |
agatatctcttgatattgttcttgaaaaggaatttgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagcttactatgaaga |
209 |
Q |
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| T |
35979779 |
agatatctcttgatattgttcttgaaaaggaatttgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagcttactatgaaga |
35979878 |
T |
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| Q |
210 |
caatgatgaatatccttgaacctgatttattattatatagac-attcatatttttagatatttttctaagatagtttgttagtgtatttgctgctctgtt |
308 |
Q |
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| T |
35979879 |
caatgatgaatatccttgaacctgatttattattatatagtctattcatatttttagatatttttctaagatagtttgttagtgtatttgctgctctgtt |
35979978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 1395002 - 1395173
Alignment:
| Q |
144 |
tgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagcttactatgaagaca---atgatgaatatccttgaacctgatttatt |
240 |
Q |
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| T |
1395002 |
tgagctttctcacaattcccaagctgcaagagttcatttatgtggatacaaagcttattaagaagagaatgatgatgaatatccttcaacctgatttatt |
1395101 |
T |
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| Q |
241 |
attatatag-acattcatattttta---gatatttttctaagatagtttgttagtgtatttgctgctctgtt |
308 |
Q |
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| T |
1395102 |
attatatagtttattcatatttttagttgatatttttctaaggtagtttgttagtgtatttggtgatctgtt |
1395173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 6086138 - 6086202
Alignment:
| Q |
136 |
aaggaatttgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagctta |
200 |
Q |
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| T |
6086138 |
aaggaatttgagctttgtcacaatttgaaaactgctagtatccatttctcttgatacaaagctta |
6086202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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