View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9266_low_5 (Length: 716)

Name: NF9266_low_5
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9266_low_5
NF9266_low_5
[»] chr5 (3 HSPs)
chr5 (124-699)||(17231618-17232195)
chr5 (18-73)||(17231502-17231557)
chr5 (28-83)||(7149865-7149920)
[»] chr4 (3 HSPs)
chr4 (35-86)||(47015558-47015609)
chr4 (41-86)||(22630350-22630395)
chr4 (45-86)||(39595927-39595968)
[»] chr2 (1 HSPs)
chr2 (41-82)||(34444079-34444120)
[»] chr7 (1 HSPs)
chr7 (634-678)||(33669698-33669742)
[»] chr1 (3 HSPs)
chr1 (623-671)||(11648291-11648339)
chr1 (44-86)||(12522109-12522151)
chr1 (41-86)||(46334801-46334846)
[»] chr8 (1 HSPs)
chr8 (28-82)||(40401606-40401660)
[»] scaffold0334 (1 HSPs)
scaffold0334 (28-85)||(5195-5252)


Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 124 - 699
Target Start/End: Original strand, 17231618 - 17232195
Alignment:
Q  124 ctgactcataggagggatcataccaaataacatcaaattgaaagactaaaattaaagatataatttttgttatttttt--aattgccaaaataaattata 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  17231618 ctgactcataggagggatcataccaaataacatcaaattgaaagactaaaattaaagatataatttttgttattttttttaatggccaaaataaattata 17231717  T
Q  222 ttaaatgacacgataatcctaaccaacataagaagtgtaaggtgagaaatcaaaagtcattacaaagagaaagtaacacaaataaatatcatggatgagt 321  Q
    ||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17231718 ttaaatgacactagaatcctaaccaatataagaagtgtaaggtgggaaatcaaaagtcattacaaagagaaagtaacacaaataaatatcatggatgagt 17231817  T
Q  322 caaaagctagtagctctatcgcttcatctggtataaccctacactccttgatatttttgactatcctgggacgaaacaaactttcttgaatatatctcat 421  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17231818 taaaagctagtagctctatcgcttcatctggtataaccctacactccttgatatttttgactatcctgggacgaaacaaactttcttgaatatatctcat 17231917  T
Q  422 gaattgatctaactaatgtagtgtctaattggatcagtcccttgaaatgatatggagcgaatatagagaatatggttcttagatcattgacattttgaag 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  17231918 gaattgatctaactaatgtagtgtctaattggatcagtcccttgaaatgatattgagcgaatatagagaatatggttcttagatcattggcattttgaag 17232017  T
Q  522 tttcattttgttaaattggacaattccatttaggttaatcaatgggtggcgaaactcaacacatagcaactttatggtatcactattgttgagaagacta 621  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  17232018 tttcattttgttaaacaggacaattccatttaggttaatcaatgggtggcgaaactcaacacatagcaactttatggtatcattattgttgagaagacca 17232117  T
Q  622 tttcagttggatcttcaaaccagaaagtgtaacattatcattgatcctaaacaaattcgagttgccacataatgaatt 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17232118 tttcagttggatcttcaaaccagaaagtgtaacattgtcattgatcctaaacaaattcgagttgccacataatgaatt 17232195  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 17231502 - 17231557
Alignment:
Q  18 gatcatattaaattggaatggaaaatgcataatatatacaatgtctgagattcaaa 73  Q
    |||||||  ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  17231502 gatcataccaaattagaatggaaaatgcataatctatgcaatgtctgagattcaaa 17231557  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 7149865 - 7149920
Alignment:
Q  28 aattggaatggaaaatgcataatatatacaatgtctgagattcaaactccgaccac 83  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||| || |||||    
T  7149865 aattggaatagacaatgcataatatatacaatgcctgaggttcaaacccccaccac 7149920  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 47015609 - 47015558
Alignment:
Q  35 atggaaaatgcataatatatacaatgtctgagattcaaactccgaccaccat 86  Q
    ||||| |||||||||||||||||| ||||| | |||||||||||||||||||    
T  47015609 atggacaatgcataatatatacaaggtctggggttcaaactccgaccaccat 47015558  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 22630395 - 22630350
Alignment:
Q  41 aatgcataatatatacaatgtctgagattcaaactccgaccaccat 86  Q
    |||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  22630395 aatgcataatatatgcaaggtctgaggttcaaaccccgaccaccat 22630350  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 39595968 - 39595927
Alignment:
Q  45 cataatatatacaatgtctgagattcaaactccgaccaccat 86  Q
    |||||||||| ||| ||||||| |||||||||||||||||||    
T  39595968 cataatatatgcaaggtctgaggttcaaactccgaccaccat 39595927  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 34444079 - 34444120
Alignment:
Q  41 aatgcataatatatacaatgtctgagattcaaactccgacca 82  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  34444079 aatgcataatatatacaaagtttgagattcaaactccgacca 34444120  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 678
Target Start/End: Original strand, 33669698 - 33669742
Alignment:
Q  634 cttcaaaccagaaagtgtaacattatcattgatcctaaacaaatt 678  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||    
T  33669698 cttcaaatcagagagtgtaacattatcattgatcctaaataaatt 33669742  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 671
Target Start/End: Original strand, 11648291 - 11648339
Alignment:
Q  623 ttcagttggatcttcaaaccagaaagtgtaacattatcattgatcctaa 671  Q
    ||||||||| |||||||| || |||||||||||||||||||||| ||||    
T  11648291 ttcagttggctcttcaaatcataaagtgtaacattatcattgattctaa 11648339  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 12522151 - 12522109
Alignment:
Q  44 gcataatatatacaatgtctgagattcaaactccgaccaccat 86  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||    
T  12522151 gcataatatatacaaggtctgaggttcaaaccccgaccaccat 12522109  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 46334801 - 46334846
Alignment:
Q  41 aatgcataatatatacaatgtctgagattcaaactccgaccaccat 86  Q
    ||||||||| |||||||| ||||||||||||||| |||| ||||||    
T  46334801 aatgcataaaatatacaaggtctgagattcaaaccccgatcaccat 46334846  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 40401606 - 40401660
Alignment:
Q  28 aattggaatggaaaatgcataatatatacaatgtctgagattcaaactccgacca 82  Q
    |||||| ||||| ||||||||| ||||  || |||||||||||||||||||||||    
T  40401606 aattggtatggacaatgcataaaatatgtaaagtctgagattcaaactccgacca 40401660  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 5195 - 5252
Alignment:
Q  28 aattggaatggaaaatgcataatatatacaatgtctgagattcaaactccgaccacca 85  Q
    |||||| ||||| |||||||||||||| ||| ||||||| ||||||| || |||||||    
T  5195 aattggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccaaccacca 5252  T

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