View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_53 (Length: 280)
Name: NF9266_low_53
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_53 |
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| [»] chr3 (6 HSPs) |
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| [»] scaffold1396 (1 HSPs) |
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| [»] scaffold0658 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 24637784 - 24638050
Alignment:
| Q |
14 |
agagagagacagttttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctatagaaga |
113 |
Q |
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| T |
24637784 |
agagagagacagttttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctatagaaga |
24637883 |
T |
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| Q |
114 |
ataactgattagttagtcacatagactgactataaacttttgtaacaatatgtgcaagaannnnnnnaataatgaaattcaatgtgatcaataataacat |
213 |
Q |
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| T |
24637884 |
ataactgattagttagtcacatagactgactataaacttttgtaacaatatgtgcaagaatttttttaataatgaaattcaatgtgatcaataataatat |
24637983 |
T |
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| Q |
214 |
ttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggct |
280 |
Q |
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| T |
24637984 |
ttagataaaataagaaaaccaagcttagagcaagtgcagcagggagcacaagcatggggtggaggct |
24638050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 24646716 - 24646983
Alignment:
| Q |
11 |
agcagagagagacagttttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctataga |
110 |
Q |
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| T |
24646716 |
agcagagagagacaggtttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctataga |
24646815 |
T |
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| Q |
111 |
agaataactgattagttagtcacatagactgactataaacttttgtaacaatatgtgcaagaannnnnnnaataatgaaattcaatgtgatcaataataa |
210 |
Q |
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| T |
24646816 |
agaataactgattagtaagtcacatagactgactataaacttttgtaaca--atgtgcaagaatttttttaataatgaaattcaatgtgatcaataataa |
24646913 |
T |
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| Q |
211 |
catttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggct |
280 |
Q |
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| T |
24646914 |
catttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggaggct |
24646983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 278
Target Start/End: Original strand, 24716457 - 24716647
Alignment:
| Q |
90 |
catgagcttagaatctatagaagaataactgattagttagtcacatagactgactataaacttttgtaacaatatgtgcaagaannnnnnn----aataa |
185 |
Q |
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| T |
24716457 |
catgagcttagaatctatagaagaataactgattagtaagtcacatagactcactataaacttctgcaacaacgaat--aagatttttttgttttagtaa |
24716554 |
T |
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| Q |
186 |
tgaaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcagggatcacaagcatggggtggagg |
278 |
Q |
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| T |
24716555 |
tgaaattcaatatgatcagtaataacatgtagataaagtaagaataccaacattagagcatttgcaacaaggaacacaagcatgaggtggagg |
24716647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 24713235 - 24713311
Alignment:
| Q |
27 |
tttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatc |
104 |
Q |
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| T |
24713235 |
tttatcattatagaaggaaagatctataaa-atgaggcaattacttagcttcatcctaaaagccatgagcttagaatc |
24713311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 24740722 - 24740847
Alignment:
| Q |
27 |
tttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctatagaagaataactgattagt |
126 |
Q |
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| T |
24740722 |
tttatctttataaaaggaaagatatattaacatgagccaaatatttcgcttcatcttacaagccatgagcttagaatctatagatgaattactaattggc |
24740821 |
T |
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| Q |
127 |
tagtcacatagactgactataaactt |
152 |
Q |
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| T |
24740822 |
aagtgacacagattcactataaactt |
24740847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 24691081 - 24691206
Alignment:
| Q |
27 |
tttatctttacagaaggaaagatttttaaacatgagccaattacttggcttcatcctaaagtccatgagcttagaatctatagaagaataactgattagt |
126 |
Q |
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|||||||| | |||||||||||| | || ||||| |||||| || |||| || ||||| || | ||||||||||||||| ||||| ||||||||| | |
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| T |
24691081 |
tttatcttgatagaaggaaagatcaatgaatatgagacaattatttagcttaatactaaaatctacgagcttagaatctattgaagagtaactgattcgc |
24691180 |
T |
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| Q |
127 |
tagtcacatagactgactataaactt |
152 |
Q |
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| T |
24691181 |
aagtcacacagattcactataaactt |
24691206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1396 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 481 - 558
Alignment:
| Q |
181 |
aataatgaaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcaggga |
258 |
Q |
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| T |
481 |
aataatgaaacataatgtgatcagtaatgacatttaaataaagtaagaaaactcaccttagagcaattgcagcaggga |
558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 8253 - 8330
Alignment:
| Q |
181 |
aataatgaaattcaatgtgatcaataataacatttagataaaataagaaaaccaaccttagagcaagtgcagcaggga |
258 |
Q |
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|||||||||| |||||||||| |||| ||||||| ||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
8253 |
aataatgaaacataatgtgatcagtaatgacatttaaataaagtaagaaaacttaccttagagcaattgcagcaggga |
8330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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