View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_low_59 (Length: 266)
Name: NF9266_low_59
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 43004926 - 43004697
Alignment:
| Q |
16 |
atatatttaagccaactactctttgacatccttcctaatactatttgaaaaagtaagtagagtacttcattgttcaagatattatttgtgaggatgtgtt |
115 |
Q |
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| T |
43004926 |
atatatttaagccaa--actctttgacatccttcctaatactatttgaaaaagtaagtagagtatttcattgttcaagatactatttgtgaggatgtgtt |
43004829 |
T |
|
| Q |
116 |
tccacacacataaatcatttcaagtacaatatttacctataacatgtatgtcgaagaacttattgtccaactatgtaggagtttaagtacaatcccttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43004828 |
tccacacacataaatcatttcaagtacaatatttacctataacatgtatgtcgaagaacttattgtccaactatgtgggagtttaagtacaatcccttgc |
43004729 |
T |
|
| Q |
216 |
cccatgttatatatgtctatcaaacatggaat |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43004728 |
cccatgttatatatgtctatcaaacatggaat |
43004697 |
T |
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