View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9266_low_73 (Length: 205)

Name: NF9266_low_73
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9266_low_73
NF9266_low_73
[»] chr4 (1 HSPs)
chr4 (19-194)||(18925367-18925542)
[»] chr7 (15 HSPs)
chr7 (22-177)||(4864234-4864389)
chr7 (24-194)||(4845642-4845812)
chr7 (24-71)||(4637275-4637322)
chr7 (24-79)||(4673113-4673168)
chr7 (19-79)||(4667351-4667411)
chr7 (24-79)||(4696820-4696875)
chr7 (135-177)||(4667253-4667295)
chr7 (24-65)||(4644131-4644172)
chr7 (24-65)||(4783465-4783506)
chr7 (24-65)||(4815894-4815935)
chr7 (132-176)||(4783573-4783617)
chr7 (132-176)||(4816002-4816046)
chr7 (135-194)||(4637152-4637211)
chr7 (24-63)||(4653922-4653961)
chr7 (123-177)||(4696919-4696973)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 18925367 - 18925542
Alignment:
Q  19 agatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925367 agatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcag 18925466  T
Q  119 cagtgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925467 cagtgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 18925542  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 4864389 - 4864234
Alignment:
Q  22 tcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcag 121  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||  || |||| || | ||||| | |||| |||| ||| ||| || |    |     
T  4864389 tcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactaccaagttcttaa 4864290  T
Q  122 tgacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac 177  Q
     ||||||| |||||||||||||||||||||||  || ||||| | |||||||||||    
T  4864289 cgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccac 4864234  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 4845642 - 4845812
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagtg 123  Q
    ||||| ||||||||||||||||||||||||||||   |||||| |||| || |||| || ||| ||||| |||| ||||   ||||| ||||  | | ||    
T  4845642 gtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatacgaaattcgtaatg 4845741  T
Q  124 acaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 194  Q
    | ||||  || |||| ||||||||||||||  |||||||| |||||||||| || |||| |||| ||||||    
T  4845742 ataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 4845812  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 4637322 - 4637275
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaat 71  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4637322 gtgtcaatgccttcttttctctattacacaaacctcaatgacccaaat 4637275  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 4673168 - 4673113
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 79  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  4673168 gtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcattt 4673113  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 4667411 - 4667351
Alignment:
Q  19 agatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 79  Q
    |||| ||||| ||||| ||||||||||||||||||||||||| |||| ||||| |||||||    
T  4667411 agattgtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcattt 4667351  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 4696820 - 4696875
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 79  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||||    
T  4696820 gtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcattt 4696875  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 4667295 - 4667253
Alignment:
Q  135 gagacggtttatagagtcagcgttggtgataatcaagttccac 177  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  4667295 gagacggtttatagagtcagcgttggtgaaagtcaagttccac 4667253  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 4644172 - 4644131
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgac 65  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4644172 gtgtctatgccttcttttctctattacacaaacctcagtgac 4644131  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 4783465 - 4783506
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgac 65  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4783465 gtgtctatgccttcttttctctattacacaaacctcagtgac 4783506  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 4815894 - 4815935
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatgac 65  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4815894 gtgtctatgccttcttttctctattacacaaacctcagtgac 4815935  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 4783573 - 4783617
Alignment:
Q  132 ttagagacggtttatagagtcagcgttggtgataatcaagttcca 176  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  4783573 ttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4783617  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 4816002 - 4816046
Alignment:
Q  132 ttagagacggtttatagagtcagcgttggtgataatcaagttcca 176  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  4816002 ttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4816046  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 4637211 - 4637152
Alignment:
Q  135 gagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 194  Q
    |||| |||||||||||||| ||||||| | ||||||||||||| |||| |||| ||||||    
T  4637211 gagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggt 4637152  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 4653961 - 4653922
Alignment:
Q  24 gtgtccatgccttcttttctctattacacaaacctcaatg 63  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  4653961 gtgtctatgccttcttttctctattactcaaacctcaatg 4653922  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 4696919 - 4696973
Alignment:
Q  123 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac 177  Q
    ||||||| |||||||||||||||||||||||  || ||||  |||||||||||||    
T  4696919 gacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccac 4696973  T

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