View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9266_low_8 (Length: 674)

Name: NF9266_low_8
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9266_low_8
NF9266_low_8
[»] chr7 (19 HSPs)
chr7 (69-658)||(22087665-22088257)
chr7 (69-338)||(22062705-22062977)
chr7 (69-335)||(22069163-22069434)
chr7 (409-658)||(22063057-22063306)
chr7 (403-658)||(22069520-22069775)
chr7 (445-658)||(22080307-22080520)
chr7 (167-338)||(22079987-22080158)
chr7 (407-475)||(661262-661330)
chr7 (167-234)||(16840208-16840275)
chr7 (167-234)||(16847291-16847358)
chr7 (169-228)||(18325390-18325449)
chr7 (167-256)||(661416-661506)
chr7 (225-275)||(6865592-6865642)
chr7 (429-470)||(7332656-7332697)
chr7 (609-653)||(12820321-12820365)
chr7 (614-654)||(13417350-13417390)
chr7 (609-653)||(19326396-19326440)
chr7 (609-653)||(19721618-19721662)
chr7 (615-655)||(22039823-22039863)
[»] chr4 (2 HSPs)
chr4 (164-228)||(11971848-11971912)
chr4 (615-652)||(10460204-10460241)
[»] chr1 (1 HSPs)
chr1 (407-478)||(15960632-15960703)
[»] chr2 (1 HSPs)
chr2 (169-256)||(10206213-10206302)
[»] chr6 (4 HSPs)
chr6 (609-654)||(6935640-6935685)
chr6 (613-654)||(6954953-6954994)
chr6 (609-654)||(24254845-24254890)
chr6 (246-298)||(6948685-6948737)
[»] chr5 (1 HSPs)
chr5 (450-478)||(23086148-23086176)


Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 69 - 658
Target Start/End: Original strand, 22087665 - 22088257
Alignment:
Q  69 gtattagggttcagcatttcagctccaattctccaaacggcgctgcattggtaataaca---ctccaacatgaatctcccccctccatctcagttgcagg 165  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |   |||||| |||||||||| ||||||||||||||||||||    
T  22087665 gtattagggttcagcgtttcagctccaattctccaaacggcgctgtattggtaataagaaaactccaatatgaatctcctccctccatctcagttgcagg 22087764  T
Q  166 cattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctcat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22087765 cattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctcat 22087864  T
Q  266 atccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatacagtccgcagatttgtatcatacgatgcgcatttcacgtcttacaaggcc 365  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22087865 gtccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatgcagtccgcagatttgtatcataagatgcgcatttcacgtcttacaaggcc 22087964  T
Q  366 gtgttcttcacagtctttcctttgctcaaaaaccctgcaagagatccttactatcaactgacagacaaggattgccgctacatcgttggttcctgcaatg 465  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  22087965 atgttcttcacagtctttcctttgctcaaaaaccctgcaagagatccttactatcaactgacggacaaggattgccgctacatcattggttcctgcaatg 22088064  T
Q  466 gattgctttgcttattcggcggaagtgagtatagagcggacgaaggagggtatagagagaaatggattcatgtttggaacccggccacaaggacaatatc 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  22088065 gattgctttgcttattcggcggaagtgagtatagagcggacgaaggagggtatagagagaaatgaattcgtgtttggaacccggccacaaggacaatatc 22088164  T
Q  566 agaaaaattagatttggatgatggcctaggtttcccttcgcatttcacgtttggttatgataattcaacagaaacttataaggtggtgtattt 658  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22088165 agaaaaattagatttggatgatggcctagatttcccttcgcatttcaagtttggttatgataattcaacagaaacttataaggtggtgtattt 22088257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 22062705 - 22062977
Alignment:
Q  69 gtattagggttcagcatttcagctccaattctccaaacggcgctgcattggtaataaca---ctccaacatgaatctcccccctccatctcagttgcagg 165  Q
    ||||||||||||||| ||||||||||||||| ||||||||| | || || |||| ||||   ||||| ||||||||||| ||||||||||||||||||||    
T  22062705 gtattagggttcagcgtttcagctccaattcaccaaacggcacagcctttgtaacaacaaaactccatcatgaatctcctccctccatctcagttgcagg 22062804  T
Q  166 cattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctcat 265  Q
     |||||||||||  ||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  22062805 tattcctccccggtgaacttattgtcgaagtgctttccttccttcctgtcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcat 22062904  T
Q  266 atccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatacagtccgcagatttgtatcatac 338  Q
    ||| ||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| | |||||||||||    
T  22062905 atctgaaccctccttcgccaaactgcaccttaacagaactacacaagatgcagtccgcacaattgtatcatac 22062977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 69 - 335
Target Start/End: Original strand, 22069163 - 22069434
Alignment:
Q  69 gtattagggttcagcatttcagctccaattctccaaa--cggcgctgcattggtaataaca---ctccaacatgaatctcccccctccatctcagttgca 163  Q
    ||||||||||||||| || ||||||||||||||||||  |||| | || ||||||| ||||   ||||||||||||||||| ||||||||||||||||||    
T  22069163 gtattagggttcagcgttacagctccaattctccaaaaacggcaccgccttggtaacaacaaaactccaacatgaatctcctccctccatctcagttgca 22069262  T
Q  164 ggcattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctc 263  Q
    || |||||||||||  ||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  22069263 ggtattcctccccggtgaacttattgtcgaagtgctttccttccttcctgtcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctc 22069362  T
Q  264 atatccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatacagtccgcagatttgtatca 335  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||| || ||||| ||| | ||||||||    
T  22069363 atatctgaaccctccttcgccaaattgcaccttaatagaactacacaagatgcagtcagcacaattgtatca 22069434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 409 - 658
Target Start/End: Original strand, 22063057 - 22063306
Alignment:
Q  409 atccttactatcaactgacagacaaggattgccgctacatcgttggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagcggacga 508  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||| |||| |    
T  22063057 atccttaccatcaactgaatgacaaggattgccactacatcgttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaa 22063156  T
Q  509 aggagggtatagagagaaatggattcatgtttggaacccggccacaaggacaatatcagaaaaattagatttggatgatggcctaggtttcccttcgcat 608  Q
     || |||||||||||||| ||| ||| | |||||||||| |||||||||| |||||||||||||||  ||   ||||||||||||||||||||||   ||    
T  22063157 tggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatttcatggtgatgatggcctaggtttcccttgtaat 22063256  T
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtgtattt 658  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063257 tacacgtttggttatgataattcaacagaaacttataaggtggtgtattt 22063306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 403 - 658
Target Start/End: Original strand, 22069520 - 22069775
Alignment:
Q  403 caagagatccttactatcaactgacagacaaggattgccgctacatcgttggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagc 502  Q
    |||||||||||||||||| |||||  ||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||  |||||||     
T  22069520 caagagatccttactatccactgaacgacaaggctttccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagaga 22069619  T
Q  503 ggacgaaggagggtatagagagaaatggattcatgtttggaacccggccacaaggacaatatcagaaaaattagatttggatgatggcctaggtttccct 602  Q
    |||| | || |||||||||||||| ||| ||| | |||||||||| |||||||||| |||||||||||||||  ||   |||||||||||||||||||||    
T  22069620 ggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatttcatggtgatgatggcctaggtttccct 22069719  T
Q  603 tcgcatttcacgtttggttatgataattcaacagaaacttataaggtggtgtattt 658  Q
    |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069720 tgtaattacacgtttggttatgataattcaacagaaacttataaggtggtgtattt 22069775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 445 - 658
Target Start/End: Original strand, 22080307 - 22080520
Alignment:
Q  445 acatcgttggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagcggacgaaggagggtatagagagaaatggattcatgtttggaa 544  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||   |||||| ||||   || |||||||||||||| ||| ||| | |||||||    
T  22080307 acattgttggttcctgcaatggattgctttgcttatttggcggaactggcaatagagaggacactggggggtatagagagaattggcttcgtttttggaa 22080406  T
Q  545 cccggccacaaggacaatatcagaaaaattagatttggatgatggcctaggtttcccttcgcatttcacgtttggttatgataattcaacagaaacttat 644  Q
    ||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||    
T  22080407 cccagccacaaggacaatatcagaaaaattagatggtgatgatggcctaggtttcccttttaacttcacgtttggttatgataattcaacagaaacttat 22080506  T
Q  645 aaggtggtgtattt 658  Q
    ||||||||||||||    
T  22080507 aaggtggtgtattt 22080520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 167 - 338
Target Start/End: Original strand, 22079987 - 22080158
Alignment:
Q  167 attcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctcata 266  Q
    ||||||||| |||||||||||    |||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  22079987 attcctccctgacgaacttattgtcgaagtgctttccttccttcctgtccaatctctcatacggctgaagtgtgtgagtaaatcatggaagtacctcata 22080086  T
Q  267 tccgaaccctacttcgccaaattgcaccttaacagaactacacaaaatacagtccgcagatttgtatcatac 338  Q
    |||||||||| ||||| ||||||||||||||| ||||||| |||| || ||||||||| |||||||||||||    
T  22080087 tccgaaccctccttcgtcaaattgcaccttaagagaactaaacaagatgcagtccgcaaatttgtatcatac 22080158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 475
Target Start/End: Complemental strand, 661330 - 661262
Alignment:
Q  407 agatccttactatcaactgacagacaaggattgccgctacatcgttggttcctgcaatggattgctttg 475  Q
    ||||||||||||||||||  | |||||  |||||||| | || |||||||| |||||||||||||||||    
T  661330 agatccttactatcaacttgctgacaaatattgccgccatattgttggttcttgcaatggattgctttg 661262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 16840275 - 16840208
Alignment:
Q  167 attcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctga 234  Q
    ||||||||| ||||||||||||  |||||||||||| |||||| |||| ||| |||| ||||| ||||    
T  16840275 attcctccctgacgaacttatcgtagaagtgctttctttccttcctgtgaaaactcttatgcgactga 16840208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 16847358 - 16847291
Alignment:
Q  167 attcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctga 234  Q
    ||||||||| ||||||||||||  |||||||||||| |||||| |||| ||| |||| ||||| ||||    
T  16847358 attcctccctgacgaacttatcgtagaagtgctttctttccttcctgttaaaactcttatgcgactga 16847291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 18325390 - 18325449
Alignment:
Q  169 tcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgc 228  Q
    |||||||||| ||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  18325390 tcctccccgatgaacttatcacagaagtgctttcttatcttcctgtgaaatctcttatgc 18325449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 661506 - 661416
Alignment:
Q  167 attcctcccc-gacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaa 256  Q
    |||||||||| |||||||||||| | ||||||||||||||||||   || ||| | || ||||  ||||||||  ||||||||||||||||    
T  661506 attcctcccctgacgaacttatcgctgaagtgctttccttccttcaagtaaaaccactgatgctactgaagtgcatgagtaagtcatggaa 661416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 6865642 - 6865592
Alignment:
Q  225 atgcggctgaagtgtttgagtaagtcatggaagtacctcatatccgaaccc 275  Q
    ||||| ||||||| | |||||||||||||||||| |||||| |||||||||    
T  6865642 atgcgactgaagtatgtgagtaagtcatggaagtccctcatctccgaaccc 6865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 7332656 - 7332697
Alignment:
Q  429 gacaaggattgccgctacatcgttggttcctgcaatggattg 470  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  7332656 gacaaggattgacacaacatcgttggttcctgcaatggattg 7332697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 653
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 653  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||    
T  12820365 ttcacatttggttatgataattcaactgacacttacaaggtggtg 12820321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 614 - 654
Target Start/End: Complemental strand, 13417390 - 13417350
Alignment:
Q  614 gtttggttatgataattcaacagaaacttataaggtggtgt 654  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  13417390 gtttggttatgataattcaacggacacttacaaggtggtgt 13417350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 653
Target Start/End: Complemental strand, 19326440 - 19326396
Alignment:
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 653  Q
    ||||| ||||| |||||||||||||| | ||||||||||||||||    
T  19326440 ttcacatttgggtatgataattcaactggaacttataaggtggtg 19326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 19721618 - 19721662
Alignment:
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 653  Q
    ||||| ||||||||||||| ||||||  |||||||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtg 19721662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 615 - 655
Target Start/End: Original strand, 22039823 - 22039863
Alignment:
Q  615 tttggttatgataattcaacagaaacttataaggtggtgta 655  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  22039823 tttggatatgataattcaacagatacttataaggtagtgta 22039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 11971912 - 11971848
Alignment:
Q  164 ggcattcctccccgacgaacttatcacagaagtgctttccttcctttctgtcaaatctctcatgc 228  Q
    |||| ||||||| ||||| |||||| |||||||||||||||||||| | ||||||||||||||||    
T  11971912 ggcaatcctccctgacgagcttatcgcagaagtgctttccttccttccggtcaaatctctcatgc 11971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 652
Target Start/End: Original strand, 10460204 - 10460241
Alignment:
Q  615 tttggttatgataattcaacagaaacttataaggtggt 652  Q
    ||||||||||||||||| || |||||||||||||||||    
T  10460204 tttggttatgataattcgactgaaacttataaggtggt 10460241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 478
Target Start/End: Original strand, 15960632 - 15960703
Alignment:
Q  407 agatccttactatcaactgacagacaaggattgccgctacatcgttggttcctgcaatggattgctttgctt 478  Q
    ||||||||| |||||| | | ||||||||||||   ||| || |||||||| ||||||||||||||||||||    
T  15960632 agatccttattatcaatttaaagacaaggattgtgtctatattgttggttcttgcaatggattgctttgctt 15960703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 10206302 - 10206213
Alignment:
Q  169 tcctccccgacgaacttatcaca--gaagtgctttccttcctttctgtcaaatctctcatgcggctgaagtgtttgagtaagtcatggaa 256  Q
    ||||||| ||||||||||||| |  ||||||||||| |||||| | || |||||||| ||||| ||||||||  ||  ||||||||||||    
T  10206302 tcctccctgacgaacttatcatatagaagtgctttctttccttcccgtgaaatctctaatgcgactgaagtgcgtgtctaagtcatggaa 10206213  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 654
Target Start/End: Complemental strand, 6935685 - 6935640
Alignment:
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtgt 654  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||    
T  6935685 ttcacttttggttatgataattcaacagacacttacaagttggtgt 6935640  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 654
Target Start/End: Complemental strand, 6954994 - 6954953
Alignment:
Q  613 cgtttggttatgataattcaacagaaacttataaggtggtgt 654  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||    
T  6954994 cgtttggttatgataattcaacagacacttacaagatggtgt 6954953  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 654
Target Start/End: Complemental strand, 24254890 - 24254845
Alignment:
Q  609 ttcacgtttggttatgataattcaacagaaacttataaggtggtgt 654  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||||    
T  24254890 ttcacatttgggtatgataattcaactggaacttataaggtggtgt 24254845  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 6948737 - 6948685
Alignment:
Q  246 aagtcatggaagtacctcatatccgaaccctacttcgccaaattgcaccttaa 298  Q
    |||||||||||   ||| |||||||| ||||||||||||||| ||||||||||    
T  6948737 aagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaa 6948685  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 478
Target Start/End: Original strand, 23086148 - 23086176
Alignment:
Q  450 gttggttcctgcaatggattgctttgctt 478  Q
    |||||||||||||||||||||||||||||    
T  23086148 gttggttcctgcaatggattgctttgctt 23086176  T

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