View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9267_high_13 (Length: 332)

Name: NF9267_high_13
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9267_high_13
NF9267_high_13
[»] scaffold0002 (1 HSPs)
scaffold0002 (151-317)||(483856-484021)
[»] chr2 (3 HSPs)
chr2 (151-317)||(7688429-7688594)
chr2 (49-132)||(33855863-33855947)
chr2 (282-315)||(13805233-13805266)
[»] scaffold0057 (1 HSPs)
scaffold0057 (151-317)||(78397-78562)
[»] chr5 (5 HSPs)
chr5 (151-317)||(33260168-33260333)
chr5 (20-135)||(20626074-20626190)
chr5 (65-132)||(23361531-23361598)
chr5 (52-132)||(16511164-16511244)
chr5 (66-130)||(17468963-17469028)
[»] chr1 (8 HSPs)
chr1 (151-317)||(21873191-21873356)
chr1 (151-317)||(6191564-6191729)
chr1 (48-132)||(19883040-19883125)
chr1 (49-132)||(15877862-15877946)
chr1 (39-124)||(26780329-26780416)
chr1 (48-132)||(39440497-39440582)
chr1 (66-130)||(15244352-15244417)
chr1 (65-128)||(21501991-21502054)
[»] chr7 (8 HSPs)
chr7 (151-317)||(16434939-16435104)
chr7 (57-132)||(5057085-5057161)
chr7 (49-132)||(23103735-23103819)
chr7 (57-135)||(7228705-7228783)
chr7 (39-132)||(45956714-45956808)
chr7 (48-140)||(23627769-23627862)
chr7 (39-132)||(29542093-29542187)
chr7 (60-132)||(16253131-16253204)
[»] chr6 (1 HSPs)
chr6 (151-309)||(2947459-2947616)
[»] chr3 (4 HSPs)
chr3 (151-317)||(9009037-9009203)
chr3 (65-135)||(4287752-4287823)
chr3 (55-132)||(33797729-33797807)
chr3 (51-139)||(32202797-32202886)
[»] chr8 (5 HSPs)
chr8 (39-132)||(37378986-37379080)
chr8 (51-132)||(22541638-22541720)
chr8 (48-132)||(25233748-25233833)
chr8 (57-130)||(16072880-16072953)
chr8 (98-131)||(25988915-25988948)
[»] chr4 (5 HSPs)
chr4 (39-132)||(20570543-20570637)
chr4 (49-132)||(51461638-51461722)
chr4 (60-132)||(5066873-5066946)
chr4 (45-129)||(19940903-19940988)
chr4 (57-132)||(11489332-11489408)


Alignment Details
Target: scaffold0002 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 483856 - 484021
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  483856 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 483954  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  483955 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaac 484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 7688429 - 7688594
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  7688429 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 7688527  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  7688528 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaac 7688594  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 33855863 - 33855947
Alignment:
Q  49 agatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||||||||    
T  33855863 agatgaagatggagataaacataaatgaaaacatgaaaagctaaattgatagattagatagagctagtacaagattacaatcctt 33855947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 13805233 - 13805266
Alignment:
Q  282 aaaatcaattgaaaaagttatctcaactgcagaa 315  Q
    |||| |||||||||||||||||||||||||||||    
T  13805233 aaaagcaattgaaaaagttatctcaactgcagaa 13805266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 78397 - 78562
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| ||||||||||||||||||     
T  78397 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagca 78495  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  78496 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaac 78562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 33260168 - 33260333
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  33260168 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 33260266  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  33260267 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaac 33260333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 20626190 - 20626074
Alignment:
Q  20 ctaccctcgttaatgcggctgaacgtcggagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtaca 118  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  20626190 ctaccctcgctaatgcggctgaacctcggagatgaagatgaagataaacataaatgaaaacatgaaaagttaaattaaaagattaaatagagttagtaca 20626091  T
Q  119 agattacaatccttaaa 135  Q
    |||||||| ||||||||    
T  20626090 agattacagtccttaaa 20626074  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 23361598 - 23361531
Alignment:
Q  65 aaacataaatgaaaacatgaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||||||||||||||||| ||||||| | |||| ||||| || |||||||||||||||||||||    
T  23361598 aaacataaatgaaaacatgaaaactaaattgatagatgaaatatagctagtacaagattacaatcctt 23361531  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 16511244 - 16511164
Alignment:
Q  52 tgaagatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||||||||   |||||||||||||||||||||| |||||||| | |||| ||||| || |||||||||||||||||||||    
T  16511244 tgaagatgaaataaaacataaatgaaaacatgaaaagctaaattgatagat-aaataaagctagtacaagattacaatcctt 16511164  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 17469028 - 17468963
Alignment:
Q  66 aacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcc 130  Q
    |||||||||||||||||| ||| ||||||||| | || |||||||| |||||  ||||||||||||    
T  17469028 aacataaatgaaaacatgaaaaactaaattaatatataaaatagagctagtaatagattacaatcc 17468963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 21873191 - 21873356
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  21873191 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 21873289  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  21873290 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaac 21873356  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 151 - 317
Target Start/End: Complemental strand, 6191729 - 6191564
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  6191729 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 6191631  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||| ||||    
T  6191630 acatcataatcaattttcatctacaaaaaacaaatgcaattgacaaagttatctcaactgcataaac 6191564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 19883040 - 19883125
Alignment:
Q  48 gagatgaagatgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||||||||| ||||| |||||||||||||| |||| ||||||| | |||| |||||||| |||||||| ||||||||||||    
T  19883040 gagatgaagatgaaaataaaaataaatgaaaacatagaaaactaaattgatagatcaaatagagctagtacaaaattacaatcctt 19883125  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 15877946 - 15877862
Alignment:
Q  49 agatgaagatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||||||||   ||||||||||||||| |||||| |||||||||| ||||| | ||||  |||||||||||||||||||||    
T  15877946 agatgaagatgaaataaaacataaatgaaaatatgaaaagctaaattaatagattgagtagatctagtacaagattacaatcctt 15877862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 26780329 - 26780416
Alignment:
Q  39 tgaacgtcggagatgaagatgaagataaacataaatgaaaacatg--aaagctaaattaaaagattaaatagagttagtacaagatta 124  Q
    ||||| || |||||| ||||||| |||||||||||||||| ||||  ||| ||||||| | ||||||||||||| |||||||| ||||    
T  26780329 tgaacatcagagatggagatgaaaataaacataaatgaaagcatgaaaaaactaaattgatagattaaatagagctagtacaaaatta 26780416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 39440497 - 39440582
Alignment:
Q  48 gagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||||||||||||   |||||||||| |||||||| ||| ||||||| | | || ||||| || |||||||||||||||||||||    
T  39440497 gagatgaagatgaaatgaaacataaataaaaacatgaaaaactaaattgatatataaaataaagctagtacaagattacaatcctt 39440582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 15244417 - 15244352
Alignment:
Q  66 aacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcc 130  Q
    |||||||||||||||||| ||| ||||||| | |||| ||||| ||||| || |||||||||||||    
T  15244417 aacataaatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagattacaatcc 15244352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 21502054 - 21501991
Alignment:
Q  65 aaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaat 128  Q
    ||||||||||||||||||| |||| |||||||| ||| |||||| || |||||||| ||||||||    
T  21502054 aaacataaatgaaaacatgaaaagttaaattaataga-taaatatagctagtacaatattacaat 21501991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 151 - 317
Target Start/End: Complemental strand, 16435104 - 16434939
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  16435104 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 16435006  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||| ||||    
T  16435005 acatcataatcaattttcatctacaaaaaataaaatcaattgaaaaagttatctcaactgcataaac 16434939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 5057085 - 5057161
Alignment:
Q  57 atgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| |||||||||||||||||||| |||| ||||||| | |||||||||| |||||| |||||||||||||||||    
T  5057085 atgaatataaacataaatgaaaacatagaaaactaaattgatagattaaatatagttaggacaagattacaatcctt 5057161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 23103819 - 23103735
Alignment:
Q  49 agatgaagatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||||||||   |||||||||||||||||| ||| |||||| ||| ||||| ||||||| |||||||||||||||||||||    
T  23103819 agatgaagatgaaataaaacataaatgaaaacataaaaagctaaagtaatagattgaatagagctagtacaagattacaatcctt 23103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 7228783 - 7228705
Alignment:
Q  57 atgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatccttaaa 135  Q
    ||||||||||||||||||||||||||| |||| |||||  | |||||||| |||| ||||||||||||||||||||||||    
T  7228783 atgaagataaacataaatgaaaacatgaaaagttaaatcgatagattaaa-agaggtagtacaagattacaatccttaaa 7228705  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 45956808 - 45956714
Alignment:
Q  39 tgaacgtcggagatgaagatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| || ||||||| | |||||  |||||||||| ||||||||||| |||||||| | |||||||||||| |||||||||| |||||||||||    
T  45956808 tgaacctcagagatgagggtgaaggaaaacataaataaaaacatgaaaagctaaattgatagattaaatagaattagtacaaggttacaatcctt 45956714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 23627862 - 23627769
Alignment:
Q  48 gagatgaagatgaagataaacataaatgaaaacatgaaagct-aaattaaaagattaaatagagttagtacaagattacaatccttaaatgaaa 140  Q
    |||||||||| ||||||||||||| || |||| || |||  | ||||||| ||||||||||||  ||||| || ||||||||||||||| ||||    
T  23627862 gagatgaagacgaagataaacatacataaaaatataaaaaattaaattaatagattaaatagaactagtataaaattacaatccttaaaggaaa 23627769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 29542093 - 29542187
Alignment:
Q  39 tgaacgtcggagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| || ||||||||||||||   ||||||| ||||||||||| |||  |||||| | |||| |||||||| |||||| | ||||||||||||    
T  29542093 tgaacctcagagatgaagatgaaatgaaacatagatgaaaacatgaaaaattaaattgatagataaaatagagctagtacgatattacaatcctt 29542187  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 16253204 - 16253131
Alignment:
Q  60 aagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| ||||||||||||||||| |||| ||||||| | |||||| ||||||||   | |||||||||||||||    
T  16253204 aagatgaacataaatgaaaacatagaaaactaaattgatagattagatagagttgtcataagattacaatcctt 16253131  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 2947459 - 2947616
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    |||||||||||||||||||||||||||||||| ||||||||| |       |||||||||||||||||||| ||||||||  ||||||||||||||| ||    
T  2947459 tccacagcaaaatcatcattgtaaatatgctaggcttcagctacaaaaag-catctcatttcatctcagtcgtaagcaccggcaatgtctcatctcaacc 2947557  T
Q  251 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaact 309  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2947558 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaact 2947616  T

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Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 9009037 - 9009203
Alignment:
Q  151 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 250  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||       |||||||| ||||||||||| |||||||| ||||| |||||||||||||    
T  9009037 tccacagcagaatcatcattgtaaatatgctaagcttcaactgcaaaaag-catctcatctcatctcagtcataagcaccgacaatatctcatctcagcc 9009135  T
Q  251 acatcataatcaa-ttttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaac 317  Q
    ||||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||| |||||||    
T  9009136 acatcataatcaatttttcaactgcaaaaaacaaaatcagttgaaaaagttatctcaactacagaaac 9009203  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 4287752 - 4287823
Alignment:
Q  65 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatccttaaa 135  Q
    |||||||||  ||||||||||| |||||||||| ||||| |||| || ||||||||||||||||||||||||    
T  4287752 aaacataaacaaaaacatgaaaagctaaattaatagatttaataaagctagtacaagattacaatccttaaa 4287823  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 33797807 - 33797729
Alignment:
Q  55 agatgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||  |||| |||||||||||||| ||||  |||||| | ||||||||||||||||||| |||||||||||||||    
T  33797807 agatgaaattaaaaataaatgaaaacatagaaaagtaaattgatagattaaatagagttagtataagattacaatcctt 33797729  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 32202797 - 32202886
Alignment:
Q  51 atgaagatgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatccttaaatgaa 139  Q
    ||||| ||||||||  | |||||||||||||| |||| ||| ||||| ||| || ||||||||   | ||||||||||||||||||||||    
T  32202797 atgaaaatgaagatggaaataaatgaaaacatagaaaactatattaatagaatagatagagttgtcaaaagattacaatccttaaatgaa 32202886  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 37378986 - 37379080
Alignment:
Q  39 tgaacgtcggagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| || |||||| ||||||| |||||||||| | |||||||| ||| ||||||| | ||||||||||||| |||||||||||||||||||||    
T  37378986 tgaacctcagagatggagatgaaaataaacataagtaaaaacatggaaaactaaattgatagattaaatagagctagtacaagattacaatcctt 37379080  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 22541720 - 22541638
Alignment:
Q  51 atgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||| || ||||||||||||||||||||| ||||||||| | | |||||||||||||  ||||||||||||| ||||||    
T  22541720 atgaagataaacataaacataaatgaaaacatgaaaagctaaactgatagattaaatagagccagtacaagattacgatcctt 22541638  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 25233833 - 25233748
Alignment:
Q  48 gagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||||||||| ||||||||||||||||| ||| ||| ||||||| | | |||||||| || ||||||| |||||||||||||    
T  25233833 gagatgaagatgaaaataaacataaatgaaaagatgaaaaactaaattgatatattaaataaagctagtacatgattacaatcctt 25233748  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 16072953 - 16072880
Alignment:
Q  57 atgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcc 130  Q
    |||||||| |||||||||| |||||| |||| ||||||| | ||||||||||||||||| ||||| |||||||||    
T  16072953 atgaagatgaacataaatggaaacatagaaaactaaattgatagattaaatagagttagcacaag-ttacaatcc 16072880  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 25988948 - 25988915
Alignment:
Q  98 agattaaatagagttagtacaagattacaatcct 131  Q
    ||||||||||||||||||||||||||||||||||    
T  25988948 agattaaatagagttagtacaagattacaatcct 25988915  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 20570637 - 20570543
Alignment:
Q  39 tgaacgtcggagatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||| || |||||||||||||| ||||||||||||||||||||| ||||  ||||| |  ||||||| |||| |||||||||||||||||||||    
T  20570637 tgaacctcagagatgaagatgaatataaacataaatgaaaacatgaaaagtgaaattgattgattaaaaagagctagtacaagattacaatcctt 20570543  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 51461722 - 51461638
Alignment:
Q  49 agatgaagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||  | | |||||| ||||||||||||    
T  51461722 agatgaagatgaaggaaaacataaatgaaaacatgaaaagctaaattaatagattaaataatgattgtacaatattacaatcctt 51461638  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 5066946 - 5066873
Alignment:
Q  60 aagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    ||||||||||||||| ||||||| |||| ||||||| | |||||||||||||||||  || |||||||||||||    
T  5066946 aagataaacataaatcaaaacatagaaaactaaattgatagattaaatagagttagctcatgattacaatcctt 5066873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 19940903 - 19940988
Alignment:
Q  45 tcggagatgaagatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatc 129  Q
    |||||||||||| ||||   ||| |||||||||||||||||| |||||||| | |||| |||||||||  ||||||||||||||||    
T  19940903 tcggagatgaaggtgaaatgaaaaataaatgaaaacatgaaaagctaaattgagagataaaatagagtatgtacaagattacaatc 19940988  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 11489332 - 11489408
Alignment:
Q  57 atgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 132  Q
    |||||||| |||||||||||||| ||| ||| ||||||| | |||| ||||| |||||| |||||||||||||||||    
T  11489332 atgaagatgaacataaatgaaaatatggaaaactaaattgatagatcaaatacagttagcacaagattacaatcctt 11489408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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