View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9267_high_3 (Length: 537)

Name: NF9267_high_3
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9267_high_3
NF9267_high_3
[»] chr4 (9 HSPs)
chr4 (152-530)||(45957408-45957792)
chr4 (180-530)||(45964505-45964855)
chr4 (210-526)||(45871158-45871467)
chr4 (361-530)||(45973278-45973447)
chr4 (359-530)||(45979490-45979661)
chr4 (149-305)||(45973473-45973629)
chr4 (149-305)||(45979697-45979853)
chr4 (51-112)||(45957813-45957871)
chr4 (76-111)||(45871059-45871094)
[»] chr5 (5 HSPs)
chr5 (204-341)||(33132244-33132381)
chr5 (43-163)||(33132379-33132499)
chr5 (360-484)||(40894192-40894309)
chr5 (174-231)||(40894043-40894100)
chr5 (267-305)||(40894119-40894157)
[»] scaffold0003 (1 HSPs)
scaffold0003 (197-526)||(298676-299011)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 152 - 530
Target Start/End: Complemental strand, 45957792 - 45957408
Alignment:
Q  152 taaaatactctagggggtaaaaatgctagcataagaagcaagcaaggagccactatagagtgtttcattatactcttgaatctcactagctggttgagta 251  Q
    |||||||||||||  | |||||||||||||||||||||| |||| |||||||  ||||||| || |||| |||||||||| |||||||||||||| | ||    
T  45957792 taaaatactctagccgataaaaatgctagcataagaagcgagcagggagccagcatagagttttccattgtactcttgaacctcactagctggttcaata 45957693  T
Q  252 ccatactcagcaccaagagatacaatctgtaaaattaaaccattctcagtcactttgattcctccgggcaacatcgtacgtcttggggatcctggtggtc 351  Q
    |||||||| ||| |||||||| |||| |||||||||| || ||| |||| |||| ||| ||| |  |||||   |||||| ||||| |||  |||  |||    
T  45957692 ccatactcggcaacaagagatgcaatttgtaaaattatacgattttcagacactctgactccgcgaggcaaagccgtacgccttggagatattggcagtc 45957593  T
Q  352 ctaa------ataactattcactgaaatccaaaattggcctcttgaatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatga 445  Q
    ||||      |  ||||| ||||||||||||||||||||||  |||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  45957592 ctaatcctaaaacactatgcactgaaatccaaaattggcctgctgaattcctcttgatgttatttggtcttccagtaagtagcatgaatagttctgatga 45957493  T
Q  446 atttgctcttggtcctttcagccaaactctttgaactctgtttgatagatattcactaacaagtacaaatgagccatctctgctt 530  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  45957492 atttgctcttggtcctttcagccatactctttggattctgtttgataggtattcaccaacaagtacaaatgagccatctttgctt 45957408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 180 - 530
Target Start/End: Complemental strand, 45964855 - 45964505
Alignment:
Q  180 gcataagaagcaagcaaggagccactatagagtgtttcattatactcttgaatctcactagctggttgagtaccatactcagcaccaagagatacaatct 279  Q
    |||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||| | || || |||||||||  |  ||||||| |||||||    
T  45964855 gcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaatct 45964756  T
Q  280 gtaaaattaaaccattctcagtcactttgattcctccgggcaacatcgtacgtcttggggatcctggtggtcctaaataactattcactgaaatccaaaa 379  Q
    |||||| ||||||||| ||| ||||| | |  |||   |||||  | | || || ||| |||| |||||  |||||| ||||| | ||||| ||||||||    
T  45964755 gtaaaactaaaccattttcattcactctaacacctgaaggcaaagtagaacatcctggagatcttggtgtccctaaaaaactactaactgatatccaaaa 45964656  T
Q  380 ttggcctcttgaatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatgaatttgctcttggtcctttcagccaaactctttga 479  Q
    ||||||||  ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  45964655 ttggcctcccgaattcctcttgatgttatctggtcttccggcaagtagcatgaataattctgatgaatttgctcttggtcctttcagccaaactcgctga 45964556  T
Q  480 actctgtttgatagatattcactaacaagtacaaatgagccatctctgctt 530  Q
    | |||||||| ||||||||||||||||||||||||||| || ||| |||||    
T  45964555 attctgtttgctagatattcactaacaagtacaaatgatccttctttgctt 45964505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 210 - 526
Target Start/End: Original strand, 45871158 - 45871467
Alignment:
Q  210 agtgtttcattatactcttgaatctcactagctggttgagtaccatactcagcaccaagagatacaatctgtaaaattaaaccattctcagtcactttga 309  Q
    |||||| |||| |||||||||| |||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||||||| |||    
T  45871158 agtgttccattgtactcttgaacctcactagttggttgagtaccatgctcagcaggaagagatacaatctgtaaaattaaacgattctcagtcactctga 45871257  T
Q  310 ttcctccgggcaacatcgtacgtcttggggatcctggtggtcctaaataactattcactgaaatccaaaattggcctcttgaatttctcttgatgttatc 409  Q
     ||||   |||||  ||||||||||||| |  ||     |||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||     
T  45871258 ctcctgtaggcaaagtcgtacgtcttggag--cc-----gtcctaaaaaactattcactgaaatccaaaattggcctcttgagttcctcttaatgttatt 45871350  T
Q  410 tggtcttccagcaagtaacatgaataattctgatgaatttgctcttggtcctttcagccaaactctttgaactctgtttgatagatattcactaacaagt 509  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |   |||| ||   | |||| |||| |||||||||    
T  45871351 tggtcttccagcaagtagcatgaataattctgatgaatttgctcttggtcctttcagccacactttccaaactttgaaggttagaaattcgctaacaagt 45871450  T
Q  510 acaaatgagccatctct 526  Q
     | ||||||||||||||    
T  45871451 gcgaatgagccatctct 45871467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 361 - 530
Target Start/End: Complemental strand, 45973447 - 45973278
Alignment:
Q  361 tattcactgaaatccaaaattggcctcttgaatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatgaatttgctcttggtcc 460  Q
    |||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  45973447 tattaactgcaatccaaaattggcctcttgaattcctctttatgttatctggtcttccagcaagtaacatgaataaatctgacgaatttgcttttggtcc 45973348  T
Q  461 tttcagccaaactctttgaactctgtttgatagatattcactaacaagtacaaatgagccatctctgctt 530  Q
    ||||| ||| |||||  ||| ||||||||  | |||||||||||||||||||||||||||||||| ||||    
T  45973347 tttcaaccacactctccgaattctgtttgcaaaatattcactaacaagtacaaatgagccatctccgctt 45973278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 359 - 530
Target Start/End: Complemental strand, 45979661 - 45979490
Alignment:
Q  359 actattcactgaaatccaaaattggcctcttgaatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatgaatttgctcttggt 458  Q
    |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||| ||||||||| |||||    
T  45979661 actattaactgcaatccaaaattggcctcttgaattcctctttatgttatctggtcttccagccagtagcatgaataaatctgaggaatttgcttttggt 45979562  T
Q  459 cctttcagccaaactctttgaactctgtttgatagatattcactaacaagtacaaatgagccatctctgctt 530  Q
    ||||||| ||| |||||  ||| |||||||| || |||||||| ||||||||||||||||||||||||||||    
T  45979561 cctttcaaccacactctccgaattctgtttgctaaatattcaccaacaagtacaaatgagccatctctgctt 45979490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 45973629 - 45973473
Alignment:
Q  149 aagtaaaatactctagggggtaaaaatgctagcataagaagcaagcaaggagccactatagagtgtttcattatactcttgaatctcactagctggttga 248  Q
    |||||||| ||||||||| ||||||||| | |||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||| | || |    
T  45973629 aagtaaaaaactctagggagtaaaaatgattgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttca 45973530  T
Q  249 gtaccatactcagcaccaagagatacaatctgtaaaattaaaccattctcagtcact 305  Q
      |||||||||  || ||||||| ||||||||||||| || ||||||||| ||||||    
T  45973529 agaccatactcctcaacaagagacacaatctgtaaaactataccattctcggtcact 45973473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 45979853 - 45979697
Alignment:
Q  149 aagtaaaatactctagggggtaaaaatgctagcataagaagcaagcaaggagccactatagagtgtttcattatactcttgaatctcactagctggttga 248  Q
    |||||||| ||||||||  ||||||||  | |||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||||  || |    
T  45979853 aagtaaaaaactctaggaagtaaaaataattgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagctacttca 45979754  T
Q  249 gtaccatactcagcaccaagagatacaatctgtaaaattaaaccattctcagtcact 305  Q
    | |||||||||  || ||||||| ||| ||||||||| || ||||||||| ||||||    
T  45979753 gcaccatactcttcaacaagagagacagtctgtaaaactataccattctcggtcact 45979697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 45957871 - 45957813
Alignment:
Q  51 attgggtgccattgcaagtatatattgatcaataattttctttatttagtccccatgtatta 112  Q
    |||||||| ||| ||||||||||||||||||||||||||||   ||||||||||||||||||    
T  45957871 attgggtgtcatcgcaagtatatattgatcaataattttct---tttagtccccatgtatta 45957813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 45871059 - 45871094
Alignment:
Q  76 tgatcaataattttctttatttagtccccatgtatt 111  Q
    ||||||||||||||||||||||||||||||||||||    
T  45871059 tgatcaataattttctttatttagtccccatgtatt 45871094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 33132381 - 33132244
Alignment:
Q  204 ctatagagtgtttcattatactcttgaatctcactagctggttgagtaccatactcagcaccaagagatacaatctgtaaaattaaaccattctcagtca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33132381 ctatagagtgtttcattatactcttgaatctcactagctggttgagtaccatactcagaaccaagagatacaatctgtaaaattaaaccattctcagtca 33132282  T
Q  304 ctttgattcctccgggcaacatcgtacgtcttggggat 341  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33132281 ctttgattcctccgggcaacatcgtacgtcttggggat 33132244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 33132499 - 33132379
Alignment:
Q  43 tcagtttcattgggtgccattgcaagtatatattgatcaataattttctttatttagtccccatgtattaactttttcatagccatgcatacaaatgtgt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33132499 tcagtttcattgggtgccattgcaagtatatattgatcaataattttctttatttagtccccatgtattaactttttcatagccatgcatacaaatgtgt 33132400  T
Q  143 agcagtaagtaaaatactcta 163  Q
    |||||||||||||||||||||    
T  33132399 agcagtaagtaaaatactcta 33132379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 360 - 484
Target Start/End: Original strand, 40894192 - 40894309
Alignment:
Q  360 ctattcactgaaatccaaaattggcctcttgaatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatgaatttgctcttggtc 459  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||| |||||||||   ||||||||||||||||||      
T  40894192 ctattcattgaaatccaaaattggcctcttgagttcttcttgatgttacttggtcttccagcaagtagcatgaataa---tgatgaatttgctcttgg-- 40894286  T
Q  460 ctttcagccaaactctttgaactct 484  Q
      |||||||| ||||| ||||||||    
T  40894287 --ttcagccacactctctgaactct 40894309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 40894043 - 40894100
Alignment:
Q  174 atgctagcataagaagcaagcaaggagccactatagagtgtttcattatactcttgaa 231  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||    
T  40894043 atgctagcataagaagcaagcagggagccacaatagagtgttccattgtactcttgaa 40894100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 40894119 - 40894157
Alignment:
Q  267 agagatacaatctgtaaaattaaaccattctcagtcact 305  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  40894119 agagatacaatctgtaaaattcaacgattctcagtcact 40894157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 197 - 526
Target Start/End: Original strand, 298676 - 299011
Alignment:
Q  197 ggagccactatagagtgtttcattatactcttgaatctcactagctggttgagtaccatactcagcaccaagagatacaatctgtaaaattaaaccattc 296  Q
    |||||||  ||||||| || |||| |||||||||| |||||||||||||| ||||||||||||||||  ||||||| |||| ||||||||||||| ||||    
T  298676 ggagccagcatagagttttccattgtactcttgaacctcactagctggttcagtaccatactcagcagtaagagatgcaatttgtaaaattaaacgattc 298775  T
Q  297 tcagtcactttgattcctccgggcaacatcgtacgtcttggggatcctggtggtcctaa------ataactattcactgaaatccaaaattggcctcttg 390  Q
    |||| |||| ||| ||| |  |||||  | ||||| ||||| |||  |||  |||||||      |  ||||| |||||||||||||||||||||||  |    
T  298776 tcagacactctgactccgcgaggcaaagttgtacgccttggagatattggcagtcctaatcctaaaacactatgcactgaaatccaaaattggcctcccg 298875  T
Q  391 aatttctcttgatgttatctggtcttccagcaagtaacatgaataattctgatgaatttgctcttggtcctttcagccaaactctttgaactctgtttga 490  Q
    |||| ||||||||||||| ||||||||||  ||||| |||||||| |||||||||||| |||||||||||||||||||| |||||| ||| |||||||||    
T  298876 aattcctcttgatgttatttggtcttccaataagtagcatgaatagttctgatgaattcgctcttggtcctttcagccacactcttcgaattctgtttga 298975  T
Q  491 tagatattcactaacaagtacaaatgagccatctct 526  Q
    |||| | ||||| | |||||||||||||||||||||    
T  298976 tagaaactcacttataagtacaaatgagccatctct 299011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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