View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9267_high_4 (Length: 517)
Name: NF9267_high_4
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 7828144 - 7828640
Alignment:
| Q |
1 |
acagacctaccagaaaaaattgaatatatggctagtcgtgcagcgaacttt-gcaaattctataccattagctttatgtgtaataggttccaatttgaag |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828144 |
acagacctaccagaaaaatttgaatatatggctagtcgtgcagcgaacttttgcaaattctataccattagctttatgtgtaataggttccaatttgaag |
7828243 |
T |
|
| Q |
100 |
ggtaaaagcatagaagaataggaattgacttgggaaaatataggaaggttccacatgctgatattcaaggtgtacttgaaataagctactatagtctatc |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828244 |
ggtaaaagcatagaagaatgggaattgacttgggaaaatataggaaggttccacatgctgatattcaaggtgtacttgaaataagctactatagtctatc |
7828343 |
T |
|
| Q |
200 |
tgaactagagagaaaaatatttttggactgtgcttgctttttcaaaggtgagaaatgggtatatgttgagagagtattagaggcttgtgattactcccca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828344 |
tgaactagagagaaaaatatttttggactgtgcttgctttttcaaaggtgagaaatgggtatatgttgagagagtattagaggcttgtgattactcccca |
7828443 |
T |
|
| Q |
300 |
agttttagagtatttgcttctaagtgtttaatgactattgatgaaaatggctgcttggagatgcatgatctaatacaagatatgggtagagaggttgtta |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828444 |
agttttagagtatttgcttctaagtgtttaatg---attgatgaaaatggctgcttggagatgcatgatctaatacaagatatgggtagagaggttgtta |
7828540 |
T |
|
| Q |
400 |
gaaagaaatcgctattaatccctggtaaccgcagcaggttatggtatcataaagacattcttcaagtactcaaagaaaactcggtaagaatgagtattct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828541 |
gaaagaaatcgctattaatccctggtaaccgcagcaggttatggtatcataaagacattcttcaagtactcaaagaaaactcggtaagaatgagtattct |
7828640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 454
Target Start/End: Complemental strand, 7837891 - 7837774
Alignment:
| Q |
337 |
ttgatgaaaatggctgcttggagatgcatgatctaatacaagatatgggtagagaggttgttagaaagaaatcgctattaatccctggtaaccgcagcag |
436 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||| |||||||||||| || || | || ||||| | || ||||||| | |||||||| |
|
|
| T |
7837891 |
ttgatgaaaatggttgtttagagatgcatgatctaatacaagacatgggtagagagattattcggaaagaatcgacttcaaaccctggtgaacgcagcag |
7837792 |
T |
|
| Q |
437 |
gttatggtatcataaaga |
454 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
7837791 |
gttatggtctcataaaga |
7837774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 7815293 - 7815415
Alignment:
| Q |
60 |
tataccattagctttatgtgtaa-taggttccaatttgaagggtaaaagcatagaagaataggaa-ttgacttgggaaaatataggaaggttccacatgc |
157 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||||||||||||| | ||| ||||||||| |||| |||| |||| ||||| ||||||||||||| |
|
|
| T |
7815293 |
tataccattaaatttatgagtaaataggttccaatttgaaggggagaag-------gaataggaaattgatttggaaaaacataggtaggttccacatgc |
7815385 |
T |
|
| Q |
158 |
tgatattcaaggtgtacttgaaataagcta |
187 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||| |
|
|
| T |
7815386 |
tggtattcaaggtgcactggaaataagcta |
7815415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 7824841 - 7824906
Alignment:
| Q |
122 |
aattgacttgggaaaatataggaaggttccacatgctgatattcaaggtgtacttgaaataagcta |
187 |
Q |
| |
|
|||||| |||| |||| ||||| ||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
7824841 |
aattgatttggaaaaacataggtaggttccacatgctggtattcaaggtgcactggaaataagcta |
7824906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 449
Target Start/End: Complemental strand, 7761731 - 7761362
Alignment:
| Q |
81 |
aataggttccaatttgaagggtaaaagcatagaagaatagga-attgacttgggaaaatataggaaggttccacatgctgatattcaaggtgtacttgaa |
179 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||| ||| ||||| ||| | |||||| ||||||||| ||||||| ||||| |||||| | ||| |
|
|
| T |
7761731 |
aataggatccaatttgaaaggtaagagcatagaggaatgggatattgaattgcagagatatagaaaggttccagatgctgagattcagggtgtattggaa |
7761632 |
T |
|
| Q |
180 |
ataagctactatagtctatctgaactagagagaaaaatatttt-tggactgtgcttgctttttcaaaggtgagaaatgggtatatgttgagagagtatta |
278 |
Q |
| |
|
|| |||||| || | ||||||| ||| | | ||||| |||| ||||| |||||| ||||||||||| || | ||||| |||||| | || || | |
|
|
| T |
7761631 |
atcagctacaatggcctatctg-acttggaacaaaaagcttttctggacattgcttgttttttcaaaggggaaagatgggattatgttaaaaggatacaa |
7761533 |
T |
|
| Q |
279 |
gaggcttgtgattactccccaagtttta-gagtatttgcttctaagtgtttaatgactattgatgaaaatggctgcttggagatgcatgatctaatacaa |
377 |
Q |
| |
|
|| |||||||||| | ||| |||| || ||||||||| | ||| ||| | | ||| ||||||||||||| || | || ||||||||| |||||||| |
|
|
| T |
7761532 |
gaagcttgtgattttttccc-agttatacgagtatttgttagtaaatgtctcttaactgttgatgaaaatggttgtatagaaatgcatgatttaatacaa |
7761434 |
T |
|
| Q |
378 |
gatatgggtagagaggttgttagaaagaaatcgctattaatccctggtaaccgcagcaggttatggtatcat |
449 |
Q |
| |
|
|| |||||||||||| ||||| | ||| | ||| || || ||||||| | |||||||| ||||||| |||| |
|
|
| T |
7761433 |
gacatgggtagagagattgttcggaaggagtcgacatcaaaccctggtgaacgcagcagattatggtctcat |
7761362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 7754649 - 7754524
Alignment:
| Q |
64 |
ccattagctttatgtgtaataggttccaatttgaagggtaaaagcatagaagaatagga-attg-acttgggaaaatataggaaggttccacatgctgat |
161 |
Q |
| |
|
||||| |||||| | |||||||| ||||| ||||| ||||||||||| ||||||| ||| |||| |||| | |||||||| ||||| ||| ||||||| |
|
|
| T |
7754649 |
ccattggctttaagagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcag-aaatatagaaaggtcccagatgctgag |
7754551 |
T |
|
| Q |
162 |
attcaaggtgtacttgaaataagctac |
188 |
Q |
| |
|
|||||||||||| | ||||| |||||| |
|
|
| T |
7754550 |
attcaaggtgtaatggaaatcagctac |
7754524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 7802902 - 7802967
Alignment:
| Q |
122 |
aattgacttgggaaaatataggaaggttccacatgctgatattcaaggtgtacttgaaataagcta |
187 |
Q |
| |
|
|||||| |||| |||| ||||| ||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
7802902 |
aattgatttggaaaaacataggtaggttccacatgctggtattcaaggtgcaccggaaataagcta |
7802967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 7754352 - 7754315
Alignment:
| Q |
360 |
atgcatgatctaatacaagatatgggtagagaggttgt |
397 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
7754352 |
atgcatgatctaatacaagacatgggtagagagattgt |
7754315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 39620986 - 39621031
Alignment:
| Q |
346 |
atggctgcttggagatgcatgatctaatacaagatatgggtagaga |
391 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
39620986 |
atggctgcttggatatgcatgatctaatacaagagatgggcagaga |
39621031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University