View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_1 (Length: 835)
Name: NF9267_low_1
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 390 - 820
Target Start/End: Complemental strand, 43184045 - 43183615
Alignment:
| Q |
390 |
acttaatcactgctccgttatggaacctttggacgattcagattcgaaactcgaacgagtcgactctgatcagacttcaactagctccgcttcaggcatt |
489 |
Q |
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| T |
43184045 |
acttaatcactgctccgttatggaacctttggacgattcagattcgaaactcgaacgagtcgactctgatcagacttcaactagctccgcttcaggcatt |
43183946 |
T |
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| Q |
490 |
tcctccgttttcagcactgacgatttccgtaacggcgacatttcctctatcagtagcggttcaggcgaaattccaacgtgcacggtgaaccgagtgattc |
589 |
Q |
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| T |
43183945 |
tcctccgttttcagcactgacgatttccgtaacggcgacatttcctctatcagtagcggttcaggcgaaattccaacgtgcacggtgaaccgagtgattc |
43183846 |
T |
|
| Q |
590 |
ttgcacctccgttgatagctatgtccaatgaagcggacaaaaacgaacctgccgcgccggaggaggtggtggtgacggctgtgacaagggagaagtgcgt |
689 |
Q |
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| T |
43183845 |
ttgcacctccgttgatagctatgtccaatgaagcggacaaaaacgaacctgccgcgccggaggaggtggtggtgacggctgtgacaagggagaagtgcgt |
43183746 |
T |
|
| Q |
690 |
aggaatgaataacaagggagtgagttggggacatacttcggtgattggaagacggagagagatggaagacgccgtcgctgttattccgggattcatgtca |
789 |
Q |
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| T |
43183745 |
aggaatgaataacaagggagtgagttggggacatacttcggtgattggaagacggagagagatggaagacgccgtcgctgttattccgggattcatgtca |
43183646 |
T |
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| Q |
790 |
cgcacttgcgatcacgtcggcggttgtactg |
820 |
Q |
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| T |
43183645 |
cgcacttgcgatcacgtcggcggttgtactg |
43183615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 43184423 - 43184111
Alignment:
| Q |
12 |
agcagagaaattattaactacagcgtaattcaatgtcgcactgtggggacggtccaatcataagcaaactgtggcttttaaaattcgcagatcaaaccat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43184423 |
agcagagaaattattaactacagcgtaattcaatgttgcactgtggggacggtccaatcataagcaaactgtggcttttaaaattcgcagatcaaaccat |
43184324 |
T |
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| Q |
112 |
gtgcgaagccagataatcaaaaacgtggaagtgatacaatcatacgcaagagatacgtttgaaaaggtggagtcacagcataaggcaggtgagtgcgagt |
211 |
Q |
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| T |
43184323 |
gtgcgaagccagataatcaaaaacgtggaagtgatacaatcatacgcaagagatacgtttgaaaaggtggagtcacagcataaggcaggtgagtgcgagt |
43184224 |
T |
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| Q |
212 |
acagacaattacttgcctcgtttctattccctgctcaacaaatcaattacaaattcacaatggatgcgtgtgccatnnnnnnnnctcgcaacaattttcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43184223 |
acagacaattacttgcctcgtttctattccctgctcaacaaatcaattacaaattcacaatggatgcgtgtgccataaaaaaaactcgcaacaattttct |
43184124 |
T |
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| Q |
312 |
tcacacgtgtcga |
324 |
Q |
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||||||||||||| |
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| T |
43184123 |
tcacacgtgtcga |
43184111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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