View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_12 (Length: 497)
Name: NF9267_low_12
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Original strand, 48289073 - 48289537
Alignment:
| Q |
21 |
ggcatatccatgttgttgatgatcccttgaattgaatcgaatcgaagaagaagtacagagatgtatgtgtgttgctgagcaacacaacagtgtgtattaa |
120 |
Q |
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| T |
48289073 |
ggcatatccatgttgttgatgatcccttgaattgaatcgaatcgaagaagaagtacagagatgtatgtgtgttgctgagcaacacaacagtgtgtattaa |
48289172 |
T |
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| Q |
121 |
tgaaaagaaaaggagtgcaccaaaacgacgtatgaagggcagaagttgtgttgagtaatagtggcagt----aaggaccacaactgacgagacgacagtc |
216 |
Q |
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| T |
48289173 |
tgaaaagaaaaggagtacaccaaaacgacgtatgaagggcagaagttgtgttgagtaatagtggcagtgagtaaggaccacaactgacgagacgacagtc |
48289272 |
T |
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| Q |
217 |
gaagttggtatttctgaacttaggctgcccactacccaacctgatagtgacttcagctcccacattcaacacatgtcaacctcaggattcttggaccaca |
316 |
Q |
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| T |
48289273 |
gaagttggcattcctgaacttaggctgcccactacccaacctgatagtgacttcagctcccacattcaacacatgtcaacctcaggattcttggaccaca |
48289372 |
T |
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| Q |
317 |
aaccttgtattgtacctgcatgcgtgtttgctgcatttcggactgcgggccgtaggatggatggaagtcattcagggtggcgtgggcc--------ctgc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
48289373 |
aaccttgtattgtacctgcatgcgtgtttgctgcatttcggactgcgggccgtaggatggatggaagtcattcagggtggcgtggggcctgcatggctgc |
48289472 |
T |
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| Q |
409 |
atgcttagactcttctccgggtagcactctggtgacataaaattgatgacatcgatcaatcacaa |
473 |
Q |
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| T |
48289473 |
atgcttagactcttctccgggtagcactctggtgacataaaatttatgacatcgattaatcacaa |
48289537 |
T |
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