View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9267_low_14 (Length: 460)
Name: NF9267_low_14
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Complemental strand, 5335237 - 5334776
Alignment:
| Q |
10 |
tggtgttccagcgagatacaggaagaatggcagatgaaaatccatgtggagaagaatcttggttgggctgagatgaggtggttgagaacaaatcccctcc |
109 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5335237 |
tggtgttccagcaagatacatgaagaatggcagatgaaaatccatgtggagaagaatcttggttgggctgagatgaggtggttgagaacaaatcccctcc |
5335138 |
T |
|
| Q |
110 |
tctgaaaaatgaatcagaagcaacaataccatcattgacagaggtaggatattttgattgtgtaggccatgtggggggtgcaacaattgaagcagatgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5335137 |
tctgaaaaatgaatcagaagcaacaataccatcattgacagaggtaggatattttgattgtgtaggccatgtggggggtgcaacaattgaagcagatgat |
5335038 |
T |
|
| Q |
210 |
gtaattgcaaaaccaaacccctcctgagttgaagcagtaggaagagttcctccaacgtgcggtggttggagaggtcctccagccatcatgttgccataag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5335037 |
gtaattgcaaaaccaaacccctcctgagttgaagcagtaggaagagttcctccaacgtgcggtggttggagaggtcctccagccatcatgttgccataag |
5334938 |
T |
|
| Q |
310 |
cagggaaggcagaggaagttgcagggtgaggtccagcaacagcaggaaagtagttttgatttggaagt---------ggtgcgaatggc--gggggtgta |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5334937 |
cagggaaggcagaggaagttgcagggtgaggtccagcaacagcaggaaagtagttttgatttggaagtggtccaaagggtgcgaatggcgggggggtgta |
5334838 |
T |
|
| Q |
399 |
acagtggcagcgaaattgatctgaggagcaggaatcatagatgcggctggaccatagaatgc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5334837 |
acagtggcagcgaaattgatctgaggagcaggaatcatagatgcggctggaccatagaatgc |
5334776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 43471181 - 43471068
Alignment:
| Q |
23 |
agatacaggaagaatggcagatgaaaatccatgtggagaagaatcttggttgggctgagatgaggtggttgagaacaaatcccctcctctgaaaaatgaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43471181 |
agatacaggaacaatggcagatgaaaatccttgtgaagaagagttttggttgggctgagatgaggtggttgagaacaaatcccctcc---gaaaaatgaa |
43471085 |
T |
|
| Q |
123 |
tcagaagcaacaatacc |
139 |
Q |
| |
|
|||||||| | |||||| |
|
|
| T |
43471084 |
tcagaagccataatacc |
43471068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 460
Target Start/End: Complemental strand, 43470721 - 43470651
Alignment:
| Q |
390 |
gggggtgtaacagtggcagcgaaattgatctgaggagcaggaatcatagatgcggctggaccatagaatgc |
460 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||||||||| | ||||| ||||||||||| ||||| |
|
|
| T |
43470721 |
gggggtgtgacagtggcagcaaaattgatctgaggggcaggaatcttggatgcagctggaccatacaatgc |
43470651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 43470899 - 43470838
Alignment:
| Q |
296 |
catgttgccataagcagggaaggcagaggaagttgcagggtgaggtccagcaacagcaggaa |
357 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43470899 |
catgttgccatacccagggaaggcggaggaagttgcagggcgaggtccagaaacagcaggaa |
43470838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University