View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_15 (Length: 419)
Name: NF9267_low_15
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 10461935 - 10461532
Alignment:
| Q |
16 |
agaccaatgaagagactttgagagaagctatggcggtgctcagggatatgtttggacccaacatccccgacgctattgacatacttgttccctgctggtg |
115 |
Q |
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| T |
10461935 |
agaccaatgaagagactttgagagaagctatggcggtgctcagggatatgtttggacccaacatccccgacgctattgacatacttgttccctgctggtg |
10461836 |
T |
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| Q |
116 |
gaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgct |
215 |
Q |
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| T |
10461835 |
gaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgct |
10461736 |
T |
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| Q |
216 |
gcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatatc |
315 |
Q |
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| T |
10461735 |
gcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatatc |
10461636 |
T |
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| Q |
316 |
agtgcatccaaagacaaaacaggggatgacctggagattacagcttgttactataattaattatcactcttcactataattctgtcttcttcttgtgtca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10461635 |
agtgcatccaaagacaaaacaggggatgacctggagattacagcttgttactataattaattatcactctttactataattctgtcttcttcttgtgtca |
10461536 |
T |
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| Q |
416 |
ctga |
419 |
Q |
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| T |
10461535 |
ctga |
10461532 |
T |
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