View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_17 (Length: 396)
Name: NF9267_low_17
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 47713906 - 47713524
Alignment:
| Q |
1 |
ccaaatctcctcatttttctcatcgcaactatggccaccgccaccacactcgttggcccacccgagttatacaccaccgtcaccgccaccactaacaaaa |
100 |
Q |
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| T |
47713906 |
ccaaatctcctcatttttctcatcacaactatggccaccgccaccacactcgttggcccacccgagttatacaccaccgtcaccgccaccactaacaaaa |
47713807 |
T |
|
| Q |
101 |
cttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactttaacagaaaacatgtcaccaacatatctcactac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47713806 |
cttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactctaacagaaaacatgtcaccaacatatctcactac |
47713707 |
T |
|
| Q |
201 |
ttgcaacccatgtcttgacttcttcttccatgttgtccccgacannnnnnnngaaactctcctccgacgacttcaattagcatggtcctataacccactc |
300 |
Q |
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| T |
47713706 |
tggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttcaattagcatggtcctataacccactc |
47713607 |
T |
|
| Q |
301 |
accacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctct |
383 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713606 |
accacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctct |
47713524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 15835815 - 15835707
Alignment:
| Q |
278 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgc |
377 |
Q |
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| T |
15835815 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgc |
15835716 |
T |
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| Q |
378 |
tgctctctg |
386 |
Q |
| |
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||||||||| |
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| T |
15835715 |
tgctctctg |
15835707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 15835918 - 15835851
Alignment:
| Q |
175 |
aacatgtcaccaacatatctcactacttgcaacccatgtcttgacttcttcttccatgttgtccccga |
242 |
Q |
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||||||||||| |||| |||| | || | |||||||| ||||| ||||||||||||||||||||||| |
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| T |
15835918 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccga |
15835851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 19796572 - 19796469
Alignment:
| Q |
283 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctc |
382 |
Q |
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|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||| |||| |
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| T |
19796572 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctc |
19796473 |
T |
|
| Q |
383 |
tctg |
386 |
Q |
| |
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|||| |
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| T |
19796472 |
tctg |
19796469 |
T |
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