View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9267_low_2 (Length: 713)

Name: NF9267_low_2
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9267_low_2
NF9267_low_2
[»] chr1 (11 HSPs)
chr1 (13-697)||(12539309-12540001)
chr1 (106-164)||(38783096-38783154)
chr1 (106-164)||(45425507-45425565)
chr1 (107-164)||(16575084-16575141)
chr1 (108-140)||(8737403-8737435)
chr1 (114-162)||(25572511-25572559)
chr1 (100-151)||(13999007-13999058)
chr1 (105-151)||(2513635-2513681)
chr1 (100-146)||(28399350-28399396)
chr1 (100-149)||(9298443-9298492)
chr1 (119-164)||(24114727-24114772)
[»] chr5 (5 HSPs)
chr5 (100-148)||(26905667-26905715)
chr5 (100-151)||(25487649-25487700)
chr5 (100-164)||(18573347-18573411)
chr5 (114-164)||(35402069-35402119)
chr5 (114-143)||(39915606-39915635)
[»] chr3 (10 HSPs)
chr3 (100-152)||(4219220-4219272)
chr3 (100-151)||(3961800-3961851)
chr3 (100-146)||(40401538-40401584)
chr3 (100-164)||(106072-106136)
chr3 (100-164)||(5327513-5327577)
chr3 (100-143)||(2147776-2147819)
chr3 (100-162)||(20044886-20044948)
chr3 (119-165)||(55125499-55125545)
chr3 (110-151)||(31348488-31348529)
chr3 (102-151)||(33975394-33975443)
[»] chr2 (11 HSPs)
chr2 (100-164)||(20607341-20607405)
chr2 (100-164)||(17792502-17792566)
chr2 (100-146)||(6431416-6431462)
chr2 (105-151)||(17116436-17116482)
chr2 (109-146)||(17767589-17767626)
chr2 (111-164)||(31811725-31811777)
chr2 (107-164)||(38233601-38233657)
chr2 (107-151)||(11426682-11426726)
chr2 (110-164)||(2550198-2550252)
chr2 (100-150)||(20379655-20379705)
chr2 (109-146)||(2763546-2763583)
[»] chr8 (11 HSPs)
chr8 (100-146)||(32778987-32779033)
chr8 (95-164)||(977276-977345)
chr8 (100-165)||(10952298-10952362)
chr8 (100-165)||(10960303-10960367)
chr8 (100-165)||(12832370-12832434)
chr8 (100-164)||(2968560-2968624)
chr8 (109-165)||(4429089-4429144)
chr8 (99-135)||(13576223-13576259)
chr8 (100-164)||(19384372-19384436)
chr8 (121-164)||(37429817-37429860)
chr8 (117-151)||(9628911-9628945)
[»] chr4 (6 HSPs)
chr4 (100-146)||(12717146-12717192)
chr4 (100-143)||(22049433-22049476)
chr4 (105-151)||(39797908-39797954)
chr4 (100-146)||(3159089-3159135)
chr4 (105-151)||(38431527-38431573)
chr4 (110-148)||(40199649-40199687)
[»] scaffold0007 (1 HSPs)
scaffold0007 (105-146)||(202084-202125)
[»] chr7 (5 HSPs)
chr7 (100-152)||(39990203-39990255)
chr7 (105-164)||(6646624-6646682)
chr7 (99-146)||(35306507-35306554)
chr7 (100-146)||(29352292-29352338)
chr7 (119-151)||(33476700-33476732)
[»] chr6 (6 HSPs)
chr6 (105-147)||(3601236-3601278)
chr6 (100-164)||(10833081-10833145)
chr6 (105-151)||(16329101-16329147)
chr6 (105-151)||(16339877-16339923)
chr6 (105-151)||(16361070-16361116)
chr6 (114-151)||(16338313-16338350)
[»] scaffold0238 (1 HSPs)
scaffold0238 (106-164)||(15713-15770)


Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 697
Target Start/End: Original strand, 12539309 - 12540001
Alignment:
Q  13 attattctcgtgacttgttcgggaagaagtgtctcacgacaacgaatattatctataagaaaacacactgcacaaaggtgaaaaatcaaaataaacgaaa 112  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  12539309 attactctcgtgacctgttcgggaagaagtgtctcgcgacaacgaatattatctataagaaaacacattgcacaaaggtgaaaaatcaaaataaatgaaa 12539408  T
Q  113 gaagactgaaaatatgtggaaatcacttatttaactaaagtagaaa-gaaaaatttgaagtgtgatttcaagtcaaaattgaagctaaatcaccctcttt 211  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  12539409 gaaggctgaaaatatgtggaaatcatttatttaactaaagtagaaaagaaaaatttgaagggtgatttcaagtcaaaattgaagctaaatcatcctcttt 12539508  T
Q  212 gttaggtcaacaagaagaattatggtgacggctaggatttgagaaagagaaaagaagtgaaagagtcgaaggtcatatatggtttcaaatacaataaagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539509 gttaggtcaacaagaagaattatggtgacggctaggatttgagaaagagaaaagaagtgaaagagtcgaaggtcatatatggtttcaaatacaataaagg 12539608  T
Q  312 agtaaatattatttaaccattaactataacatttttcattaaaaaatattatatagtgttagggttagctagggtagcggtagtaatcttgaatctgtgt 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||    
T  12539609 agtatatattatttaaccattaactataacatttttcattaaaaaatattatata--gtaggggttagctagggtagcggtagtaatcttgaatctgtgt 12539706  T
Q  412 tgttacttctgttgtgcgcaaagcatacattcagtgc---caacaacaatgttgtcaaggttaataagatatgttggtacctc------ttctgtttctg 502  Q
    |||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
T  12539707 tgttacttctgttgtgcgcaaaacatacattcagtgcaaacaacaacaatgttgtcaaggttaataagatatgttggtacctcttctgtttctgtttctg 12539806  T
Q  503 tttcagtttcttcttctattattattcccaacaataacaagctgtttcctcctcctcgtccttttgtttcataccttattcgttccttctcttcaagtac 602  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539807 tttctgtttcttcttctattattattcccaacaataacaagctgtttcctcctcctcgtccttttgtttcataccttattcgttccttctcttcaagtac 12539906  T
Q  603 acttacagaacccttgctctttaatcctgaaactcttaaccatcgttctgcttttcttgtattcgatgcgatgctcgatttcgatggcttctatt 697  Q
    | ||||||||||||||  |||||||| |||||||||| | |||  ||||||| ||| | ||||||||  ||||||||||| ||||||||||||||    
T  12539907 aattacagaacccttgtactttaatcttgaaactcttgatcatttttctgctattcgtatattcgatctgatgctcgattacgatggcttctatt 12540001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 38783154 - 38783096
Alignment:
Q  106 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||| ||| |||||||||||||  ||||||||||||||||||||  |||||||||||    
T  38783154 aacgaaggaaaactgaaaatatgttaaaatcacttatttaactaaaagagaaagaaaaa 38783096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 45425507 - 45425565
Alignment:
Q  106 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||||| | |||||||| ||||| ||||||||||||||||||  |||||||||||    
T  45425507 aacgaaagaaaattgaaaatacgtggatatcacttatttaactaaaagagaaagaaaaa 45425565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 16575084 - 16575141
Alignment:
Q  107 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||  | |||||||||    
T  16575084 acgaaagaagattgaaaatatgtggaaaccacctatttaactaaaagaaaaagaaaaa 16575141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 8737435 - 8737403
Alignment:
Q  108 cgaaagaagactgaaaatatgtggaaatcactt 140  Q
    |||||||||||||||||||||||||||||||||    
T  8737435 cgaaagaagactgaaaatatgtggaaatcactt 8737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 25572511 - 25572559
Alignment:
Q  114 aagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaa 162  Q
    |||| |||||||||||||||||||||||||||| ||||  |||||||||    
T  25572511 aagattgaaaatatgtggaaatcacttatttaaataaaaaagaaagaaa 25572559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 13999058 - 13999007
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||| |||||||| || |||||||||||||| |||||| |||||||||||||    
T  13999058 aaaacaaacgaaataatactgaaaatatgtgaaaatcatttatttaactaaa 13999007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 2513635 - 2513681
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||| |||||||||||||| || |||||| |||||||||||||    
T  2513635 aaacgaaataagactgaaaatatatgaaaatcatttatttaactaaa 2513681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 28399350 - 28399396
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| ||||||||||| ||| |||||||||| |||||||||||||||    
T  28399350 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaa 28399396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 9298443 - 9298492
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaacta 149  Q
    |||| ||||||||||| ||| |||||| |||||||||| |||||||||||    
T  9298443 aaaacaaacgaaagaaaacttaaaatacgtggaaatcaattatttaacta 9298492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 24114727 - 24114772
Alignment:
Q  119 tgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||||||  ||||||||||||||||||||  |||||||||||    
T  24114727 tgaaaatatgttaaaatcacttatttaactaaaaaagaaagaaaaa 24114772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 26905667 - 26905715
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaact 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26905667 aaaacaaacgaaagaagactgaaaatatgtggaaatcacttatttaact 26905715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 25487700 - 25487649
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||| ||||||||||| | |||||||||||| ||||||||||||||||||||    
T  25487700 aaaacaaacgaaagaacaatgaaaatatgtgaaaatcacttatttaactaaa 25487649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 18573411 - 18573347
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||| ||||||||| ||||||||| || ||||||||| ||||||||||  |||||||||||    
T  18573411 aaaacaaaagaaagaagattgaaaatatatgaaaatcacttgtttaactaaaaaagaaagaaaaa 18573347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 35402119 - 35402069
Alignment:
Q  114 aagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||| |||||||||||||||||||||||||  | |||||||||    
T  35402119 aagattgaaaatttgtggaaatcacttatttaactaaacaataaagaaaaa 35402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 39915635 - 39915606
Alignment:
Q  114 aagactgaaaatatgtggaaatcacttatt 143  Q
    ||||||||||||||||||||||||||||||    
T  39915635 aagactgaaaatatgtggaaatcacttatt 39915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 4219272 - 4219220
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaag 152  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  4219272 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaactaaag 4219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 3961800 - 3961851
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||| |||||||| || ||||||||||||||||||||| |||||||||||||    
T  3961800 aaaacaaacgaaataatactgaaaatatgtggaaatcatttatttaactaaa 3961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 40401538 - 40401584
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  40401538 aaaataaacgaaatatgactgaaaatacgtggaaatcacttatttaa 40401584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 106072 - 106136
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| ||  |||||| ||||||    
T  106072 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaattagggtagaatgaaaaa 106136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 5327513 - 5327577
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||||||| ||||||||| ||||  |||||||||||||||| ||  |||||||||||    
T  5327513 aaaacaaacgaaagaaaactgaaaatttgtgataatcacttatttaactgaaagagaaagaaaaa 5327577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 2147819 - 2147776
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 143  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||    
T  2147819 aaaacaaatgaaagaaaactgaaaatatgtggaaatcacttatt 2147776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 20044886 - 20044948
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaa 162  Q
    ||||||||| ||| || | ||||  |||||| ||||||||||||||||||||| |||||||||    
T  20044886 aaaataaacaaaataatattgaatttatgtgaaaatcacttatttaactaaagaagaaagaaa 20044948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 55125545 - 55125499
Alignment:
Q  119 tgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 165  Q
    ||||||||||||||| ||| |||||||||||||  ||||||||||||    
T  55125545 tgaaaatatgtggaagtcatttatttaactaaaaaagaaagaaaaat 55125499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 31348529 - 31348488
Alignment:
Q  110 aaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  31348529 aaagaagacttaatttatgtggaaatcacttatttaactaaa 31348488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 33975394 - 33975443
Alignment:
Q  102 aataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    ||||||| |||||| || ||||||||||| ||||||||| ||||||||||    
T  33975394 aataaacaaaagaataccgaaaatatgtgcaaatcacttgtttaactaaa 33975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 20607341 - 20607405
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||||||| |||||||||||||| |||||||||| |||||||||  |||||||||||    
T  20607341 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttagttaactaaaaaagaaagaaaaa 20607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 17792566 - 17792502
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||||||| |||||||||||||| ||||| |||||||||||| |  |||||||||||    
T  17792566 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaagaaaaa 17792502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 6431416 - 6431462
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||    
T  6431416 aaaacaaacaaaagaaaactgaaaatatgtggaaatcacttatttaa 6431462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 17116436 - 17116482
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||    
T  17116436 aaacgaaagaagactgaaaatatgtgaaaatcactaatttaaataaa 17116482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 17767589 - 17767626
Alignment:
Q  109 gaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17767589 gaaagaaaactgaaaatatgtggaaatcacttatttaa 17767626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 31811777 - 31811725
Alignment:
Q  111 aagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  31811777 aagaagactgaaaatatgtgaaaatcacttatttaattaaa-tagaatgaaaaa 31811725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 38233657 - 38233601
Alignment:
Q  107 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    ||||||||||| | |||||||||||||| |||||||||||||||| || |||||||||    
T  38233657 acgaaagaagaataaaaatatgtggaaaacacttatttaactaaaata-aaagaaaaa 38233601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 11426726 - 11426682
Alignment:
Q  107 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||    
T  11426726 acgaaagcatactgaaaatatgtggaaatcactcatttaactaaa 11426682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 2550252 - 2550198
Alignment:
Q  110 aaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||| ||| |||||| ||||||||||||||||||| ||||  |||||||||||    
T  2550252 aaagaaaactaaaaatacgtggaaatcacttatttaattaaaagagaaagaaaaa 2550198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 20379705 - 20379655
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaa 150  Q
    ||||||||| ||||| || |||||||||||| |||| ||||||||||||||    
T  20379705 aaaataaacaaaagatgattgaaaatatgtgaaaataacttatttaactaa 20379655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 2763546 - 2763583
Alignment:
Q  109 gaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  2763546 gaaagaagactgaaaatatgtgaaaattacttatttaa 2763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 32778987 - 32779033
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  32778987 aaaataaacgaaagaaaactgaaaatatgtggaaatctcttatttaa 32779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 977345 - 977276
Alignment:
Q  95 aaatcaaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    ||||||||| |||| ||| || ||||||||||  |||||||||||||||||||||||  |||| ||||||    
T  977345 aaatcaaaacaaacaaaaaaaaactgaaaatacatggaaatcacttatttaactaaaaaagaaggaaaaa 977276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 10952298 - 10952362
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 165  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||  | ||||||||||    
T  10952298 aaaataaacgaaaaaagattgaaaa-atgtgaaaatcacttatttaactaaaagaaaaagaaaaat 10952362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 10960303 - 10960367
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 165  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||  | ||||||||||    
T  10960303 aaaataaacgaaaaaagattgaaaa-atgtgaaaatcacttatttaactaaaagaaaaagaaaaat 10960367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 12832370 - 12832434
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 165  Q
    |||| ||||||||||  | ||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12832370 aaaacaaacgaaagataattgaaaatatgtggaaatcaattatttaactaaa-aagaaagaaaaat 12832434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 2968624 - 2968560
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| || | || |||||||||    
T  2968624 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaattagaatataaagaaaaa 2968560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 4429144 - 4429089
Alignment:
Q  109 gaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 165  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  4429144 gaaagaagattgaaaatatgtgaaaatcacctatttaactaaa-aagaaagaaaaat 4429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 13576223 - 13576259
Alignment:
Q  99 caaaataaacgaaagaagactgaaaatatgtggaaat 135  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13576223 caaaataaacgaaagaaaactgaaaatatgtggaaat 13576259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 19384436 - 19384372
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||||| |||||  ||||||||||||| |||| |||| ||||||||||  |||||||||||    
T  19384436 aaaataaacggaagaaagctgaaaatatgtgaaaattacttgtttaactaaaagagaaagaaaaa 19384372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 37429817 - 37429860
Alignment:
Q  121 aaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||    
T  37429817 aaaatatgtgaaaatcacttattaaactaaaatagaaagaaaaa 37429860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 9628911 - 9628945
Alignment:
Q  117 actgaaaatatgtggaaatcacttatttaactaaa 151  Q
    ||||||||||||||||||||| |||||||||||||    
T  9628911 actgaaaatatgtggaaatcatttatttaactaaa 9628945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 12717146 - 12717192
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12717146 aaaacaaacgaaagaaaactgaaaatatgtggaaatcacttatttaa 12717192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 22049433 - 22049476
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 143  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  22049433 aaaataaatgaaagaaaactgaaaatatgtggaaatcacttatt 22049476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 39797954 - 39797908
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||    
T  39797954 aaacgaaagaagattgaaaatatatgaaaatcacttatttaactaaa 39797908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 3159135 - 3159089
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||    
T  3159135 aaaacaaacgaaagaaagctgaaaatatgtgaaaatcacttatttaa 3159089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 38431527 - 38431573
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  38431527 aaacgaaataagattgaaaatatgtgaaaatcgcttatttaactaaa 38431573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 40199649 - 40199687
Alignment:
Q  110 aaagaagactgaaaatatgtggaaatcacttatttaact 148  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40199649 aaagaagattggaaatatgtggaaatcacttatttaact 40199687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 202084 - 202125
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  202084 aaacgaaagaatactgaaaatatgtggaaatcacttatttaa 202125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 39990203 - 39990255
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaag 152  Q
    |||| ||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  39990203 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacctatttaactaaag 39990255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 6646624 - 6646682
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    ||||||||||| |||||||||||||| |||||  |||||||||||||| |||||||||||    
T  6646624 aaacgaaagaaaactgaaaatatgtgaaaatcctttatttaactaaag-agaaagaaaaa 6646682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 35306507 - 35306554
Alignment:
Q  99 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||    
T  35306507 caaagtaaaggaaagaagactgaaaatatgtgtaaatcacttatttaa 35306554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 29352338 - 29352292
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 146  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  29352338 aaaacaaacgaaagaaaactgagaatatgtggaaatcacttatttaa 29352292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 33476700 - 33476732
Alignment:
Q  119 tgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||||||||||||||||||||||||||||    
T  33476700 tgaaaatatgtggaaatcacttatttaactaaa 33476732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 3601236 - 3601278
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaac 147  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  3601236 aaacgtaagaagactgaacatatgtggaaatcacttatttaac 3601278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 10833145 - 10833081
Alignment:
Q  100 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    |||||||| |||| |||| |||||||||||| |||||||||||| ||||||   |||||||||||    
T  10833145 aaaataaatgaaaaaagattgaaaatatgtgaaaatcacttattcaactaataaagaaagaaaaa 10833081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 16329101 - 16329147
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||| ||||||||||||||||| |||| | |||||||||||||    
T  16329101 aaacgaaacaagactgaaaatatgtgaaaatgaattatttaactaaa 16329147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 16339877 - 16339923
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||||    
T  16339877 aaacgaaacaagactgcaaatatgtggaaatgagttatttaactaaa 16339923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 16361070 - 16361116
Alignment:
Q  105 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||| |||||||| ||||||||||||| | |||||||||||||    
T  16361070 aaacgaaacaagactgacaatatgtggaaatgagttatttaactaaa 16361116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 16338313 - 16338350
Alignment:
Q  114 aagactgaaaatatgtggaaatcacttatttaactaaa 151  Q
    |||||||||||||||||||||| | |||||||||||||    
T  16338313 aagactgaaaatatgtggaaatgagttatttaactaaa 16338350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 15713 - 15770
Alignment:
Q  106 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 164  Q
    ||||||||||  ||||||| ||||||||||||||||||||| ||||  |||||||||||    
T  15713 aacgaaagaaagctgaaaa-atgtggaaatcacttatttaattaaaagagaaagaaaaa 15770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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