View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_21 (Length: 382)
Name: NF9267_low_21
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 26617455 - 26617098
Alignment:
| Q |
17 |
agtcaaagagtaaatcacattcatgtagaacacatgaaatgaatttgtaggttaagtagtatctaaaatgagaaaatgcaaagtgggccaatgcatgaaa |
116 |
Q |
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| T |
26617455 |
agtcaaatagtaaatcatattcatgtagaagacatgaaatgaatttgtaggttaagtagtatctaaaatgagaaaatgcaaagtgggccaatgcatgaaa |
26617356 |
T |
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| Q |
117 |
agcaaagaccaatttgactggatctttaaagaattaaccaccatgcatacagaaaccacatgcattcactgttactttacatgatgaccnnnnnnnnnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26617355 |
agcaaagaccaatttgactggatctttaaagaattaaccaccatgcatacagaaaccacatgcattcactgttactttacatgatgaccctctctctctc |
26617256 |
T |
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| Q |
217 |
nnnnnnnnnnnnattgacccatacatacataatacggttaatttacaaccaagacagctcattcacatgggtcttgggttacccatgtggacccctgtgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26617255 |
tcactctctctcattgacccatacatacataatacggttaatttacaaccaagacagctcattcacatgggtcttgggttacccatgtggacccctgtgt |
26617156 |
T |
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| Q |
317 |
ccacatgttatagcaaaatcataatatatatattgtgtgtcagtaagtgatgtccatc |
374 |
Q |
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| T |
26617155 |
ccacatgttatagcaaaatcataatatatatattgtgtgtcagtaagtgatgaccatc |
26617098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 51721255 - 51721406
Alignment:
| Q |
47 |
cacatgaaatgaatttgtaggttaagtagtatctaaaatgagaaaatgcaaagtgggccaatgcatgaaaagcaaagaccaatttgactggatctttaaa |
146 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51721255 |
cacatgaaatgaatttctagattcggtagtatctaaaatgagaaaatgcaaagtgggccaatgcatgaaaagcaaagaccaatttgactggatctttaaa |
51721354 |
T |
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| Q |
147 |
gaattaac-----caccatgcatacagaaaccacatgcattcactgttactt |
193 |
Q |
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| T |
51721355 |
gaattaaccaccacaccatgcatacagaaaccacatgcattcactattactt |
51721406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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