View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_22 (Length: 379)
Name: NF9267_low_22
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 23407921 - 23408093
Alignment:
| Q |
1 |
tgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttccttctaagctcacctctgaactttcatgtatatattttgtatca |
100 |
Q |
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| T |
23407921 |
tgttcatatattagcattagctggatatagaatcaaacacacaccatgtatctttctttctaagctcacctctgaactttcatgtatatattttgtatca |
23408020 |
T |
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| Q |
101 |
gatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataata |
173 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23408021 |
gatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtcaaattacaaaataata |
23408093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
183 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
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| Q |
283 |
taaaattgattaattataaacaatcacaatccaca |
317 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
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