View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9267_low_27 (Length: 356)

Name: NF9267_low_27
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9267_low_27
NF9267_low_27
[»] chr3 (13 HSPs)
chr3 (1-209)||(25084635-25084843)
chr3 (13-184)||(24923858-24924030)
chr3 (63-209)||(24981719-24981866)
chr3 (1-184)||(24920257-24920450)
chr3 (277-356)||(25084911-25084990)
chr3 (280-356)||(24497489-24497565)
chr3 (280-356)||(24923690-24923766)
chr3 (277-356)||(24920116-24920195)
chr3 (280-356)||(21584827-21584903)
chr3 (280-356)||(24981922-24981998)
chr3 (280-339)||(31825804-31825863)
chr3 (10-203)||(31825933-31826127)
chr3 (54-122)||(21585022-21585090)
[»] chr7 (2 HSPs)
chr7 (281-354)||(39955077-39955150)
chr7 (281-356)||(10575264-10575339)
[»] chr8 (1 HSPs)
chr8 (280-336)||(14261282-14261338)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 25084635 - 25084843
Alignment:
Q  1 aaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaatcca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25084635 aaatgaaaacggaccgttcaaatatactcatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcaataagttgaaatcca 25084734  T
Q  101 acgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctctttccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084735 acgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactaccattcataaatactcagatccgtttctctctttccca 25084834  T
Q  201 ctcacaatt 209  Q
    |||||||||    
T  25084835 ctcacaatt 25084843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 24924030 - 24923858
Alignment:
Q  13 accgttcaaatatacttatcgacggtcattattatttttctcaatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagaga 112  Q
    |||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||      
T  24924030 accgttcaaataaacttatcgacgttcactattctttttctcaatacgcacggatcgctaatataaaccgtcgataacttaaaatccaacgacgcagaag 24923931  T
Q  113 aaaacacaaatttgagtttccctcttattcatcccg--ctagctaccaactaccattcataaatactcagatcc 184  Q
    |||||||||| ||||| ||||||||| ||| |||||  ||  ||||||| ||||||| ||||||||||||||||    
T  24923930 aaaacacaaaattgag-ttccctcttcttcctcccgctctcactaccaattaccattgataaatactcagatcc 24923858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 24981719 - 24981866
Alignment:
Q  63 cggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaacta 162  Q
    |||||||||||| |||| |||||||||| |||||||||||||| ||||  |||||||||| || ||||||||||||||||| |||||| ||||    |||    
T  24981719 cggatcgctaatatagatcgtcgataagatgaaatccaacgactcagatcaaaacacaaaattcagtttccctcttattcaacccgctcgctagtcgcta 24981818  T
Q  163 ccattcataaatactcagatccgtttctc-tctttcccactcacaatt 209  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  24981819 ccattcataaatactcagatccgcttctcttttttcccactcacaatt 24981866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 24920450 - 24920257
Alignment:
Q  1 aaatgaaaacggaccgttcaaatatacttatcgacggtcattattatttttctcaa-tacgcacggatcgctaatttagaccgtcgataagttgaaatcc 99  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||| ||||  | || ||| | |||||||||||| ||||||||||||||||||||||||    
T  24920450 aaatgaaaacggaccgttcaaatatacttatcaacgttcagtattgttttggtgaactacacgcggatcgctaatatagaccgtcgataagttgaaatcc 24920351  T
Q  100 aacgacgcagagaaaaacacaaatttgagtttccctcttat---------tcatcccgctagctaccaactaccattcataaatactcagatcc 184  Q
    |||||| ||||  |||||||||| || |||||||||||| |         |||||||||| ||| |||| |||||| |||||||||||||||||    
T  24920350 aacgacacagaagaaaacacaaaattcagtttccctcttcttcttcatcctcatcccgctcgcttccaattaccatacataaatactcagatcc 24920257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 25084911 - 25084990
Alignment:
Q  277 cgcgaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  25084911 cgcgaaaatgtcaggtcgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcatagaaaggttcttcgtg 25084990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 24497565 - 24497489
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24497565 gaaaatgtcagggcgtggaaagggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtg 24497489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 24923766 - 24923690
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  24923766 gaaaatgtcaggtcgtggtaagggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtg 24923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 24920195 - 24920116
Alignment:
Q  277 cgcgaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  24920195 cgcgaaaatgtctggccgtggaaagggaggtaagggattgggaaagggaggtgcaaagaggcataggaaagttcttcgtg 24920116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 21584903 - 21584827
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||    
T  21584903 gaaaatgtcaggtcgtggaaagggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtg 21584827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 24981922 - 24981998
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  24981922 gaaaatgtcagggcgtggaaaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtg 24981998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 31825863 - 31825804
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggca 339  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||    
T  31825863 gaaaatgtcaggtcgtggtaagggaggtaaggggctaggaaagggaggtgcaaaaaggca 31825804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 31826127 - 31825933
Alignment:
Q  10 cggaccgttcaaatatacttatcgacggtcattattatttttct-caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgca 108  Q
    |||| |||||||||| ||||||| ||| |||| |||   ||||  ||||||||||||||||| |  ||| |||||| || |  | ||||||||||||  |    
T  31826127 cggagcgttcaaatacacttatcaacgttcatcattcgctttccgcaatacgcacggatcgcaatcttacaccgtctattacatcaaatccaacgactga 31826028  T
Q  109 gagaaaaacacaaatttgagtttccctcttattcatcccgctagctaccaactacc-attcataaatactcagatccgtttctctctttcccactc 203  Q
    ||  |||||||||| || |||| |||||||||||||||||||  |   |  | ||| ||||||||||||||||||||  |||||||||||||||||    
T  31826027 gatcaaaacacaaaattcagtt-ccctcttattcatcccgctctcacgctcccacccattcataaatactcagatccccttctctctttcccactc 31825933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 21585090 - 21585022
Alignment:
Q  54 caatacgcacggatcgctaatttagaccgtcgataagttgaaatccaacgacgcagagaaaaacacaaa 122  Q
    ||||||||||||||||| |||||| ||||||||| |  | |||||||||||| || |  ||||||||||    
T  21585090 caatacgcacggatcgccaatttaaaccgtcgattacgtaaaatccaacgacccatatcaaaacacaaa 21585022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 39955150 - 39955077
Alignment:
Q  281 aaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcg 354  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| || |||||||||||    
T  39955150 aaaatgtcaggtcgtggaaaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcg 39955077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 10575264 - 10575339
Alignment:
Q  281 aaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagaggcataggaaggttcttcgtg 356  Q
    |||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||| ||| | |||||||| ||||    
T  10575264 aaaatgtctggtcgtggaaagggaggtaaaggattaggaaaggggggtgcaaagagacatcgcaaggttctccgtg 10575339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 14261338 - 14261282
Alignment:
Q  280 gaaaatgtcaggtcgtggaaagggaggtaagggactgggaaagggaggtgcaaagag 336  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  14261338 gaaaatgtcaggtcgtggaaagggaggtaagggattaggaaagggaggtgcaaagag 14261282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University