View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_3 (Length: 600)
Name: NF9267_low_3
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 169 - 591
Target Start/End: Complemental strand, 33431213 - 33430791
Alignment:
| Q |
169 |
tattatttatatatctaacatcttctgttaaactcaaccttattgatgatatattagctatttattattggtactttggagactatctttgaaagtgatt |
268 |
Q |
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| T |
33431213 |
tattatttatatatctaacatcttctgttaaactcaaccttattgatgatatattagctatttattattggtactttggagactatctttgaaagtgatt |
33431114 |
T |
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| Q |
269 |
gtctctaatttaaaaatgttacataagctgtattggtataggcatgtagccacgcgccacaaaggtagggtgcaagtgaaatatttaatattttttgtgc |
368 |
Q |
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| T |
33431113 |
gtctctaatttaaaaatgttacataagctgtattggcataggcttgtagccacgcgccacaaaggtagggtgcaagtgaaatatttaatattttttgtgc |
33431014 |
T |
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| Q |
369 |
atctttatttattgctcatatgatattggtgattgaatatttgcattgttttttgtagatgtttgctcaaaccttctttctattaaaaaattagactaag |
468 |
Q |
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| T |
33431013 |
atctttatttattgctcatatgatattggtgattgaatatttgcattgttttttgtagatgtttgctcaaaccttctttctattaaaaaattagactaag |
33430914 |
T |
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| Q |
469 |
gtatgctatgatcgatgatgatgaggttgtcacttttatcatcagtctttatctaagcaatcagcatatataatctaaagtggcatataagtaattaatt |
568 |
Q |
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| T |
33430913 |
gtatgctatgatcgatgatgatgaggttgtcacttttatcatcagtctttatctaagcaatcagcatatataatctaaagtggcatataagtaattaatt |
33430814 |
T |
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| Q |
569 |
ataaattagttgtctctgcttct |
591 |
Q |
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| T |
33430813 |
ataaattagttgtctctgattct |
33430791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 33431393 - 33431226
Alignment:
| Q |
18 |
atatttttctttggtcattaaatataatatatgatcacaaataatttttattagtttctttttctattaaccaagttttattcactagattttaagatgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
33431393 |
atatttttctttggtcattaaatataatatatgatcagaaataatttttattagtttctttttctattaaccaagttttatttactgaattttaaaatgc |
33431294 |
T |
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| Q |
118 |
acattaaatatgagtacatctttcaatc-aacatttaaatcttaattcatcatattatttatatatct |
184 |
Q |
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| T |
33431293 |
acattaaatatgagtacatctttcaatcaaatatttaaatcttaattcatcgtattatttatatatct |
33431226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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