View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9267_low_4 (Length: 585)

Name: NF9267_low_4
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9267_low_4
NF9267_low_4
[»] chr1 (4 HSPs)
chr1 (1-398)||(44973511-44973905)
chr1 (499-571)||(44973290-44973362)
chr1 (437-493)||(44973397-44973453)
chr1 (439-475)||(52186857-52186893)
[»] chr4 (4 HSPs)
chr4 (439-475)||(42096834-42096870)
chr4 (443-474)||(959084-959115)
chr4 (439-474)||(33648318-33648353)
chr4 (443-474)||(43635737-43635768)
[»] chr7 (3 HSPs)
chr7 (440-475)||(31756771-31756806)
chr7 (440-493)||(16862809-16862862)
chr7 (439-475)||(3756514-3756550)
[»] chr8 (2 HSPs)
chr8 (440-477)||(5995233-5995270)
chr8 (439-475)||(12750294-12750330)
[»] chr6 (3 HSPs)
chr6 (443-474)||(3607085-3607116)
chr6 (439-475)||(8110080-8110116)
chr6 (439-475)||(33699453-33699489)
[»] chr5 (4 HSPs)
chr5 (443-474)||(15398389-15398420)
chr5 (440-473)||(7599609-7599642)
chr5 (436-473)||(28228927-28228964)
chr5 (440-476)||(35446951-35446987)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 44973905 - 44973511
Alignment:
Q  1 gtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973905 gtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttgga 44973806  T
Q  101 gtgaaattaaggttttggtgggatggaacaatgagtgtttgtgtttccatgcgtt-ggaatgtataacgttggtgtggatgataaagagagacaaaaata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  44973805 gtgaaattaaggttttggtgggatggaacaatgagtgtttgtgtttccatgcgttgggagagtataacgttggtgtggatgataaagagagacaaaaata 44973706  T
Q  200 aaggaataattaaaaatgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcact 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973705 aaggaataattaaaaatgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcact 44973606  T
Q  300 tatatatatagtccgtgagccttttgtgtttataaatgcaaaaatgatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 398  Q
        ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973605 ----tatatagtccgtgagccttttgtgtttataaatgcaacaatcatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 44973511  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 499 - 571
Target Start/End: Complemental strand, 44973362 - 44973290
Alignment:
Q  499 agtaaaaatagatggaagaaaaacggtactcaattgaagatgaatctcctattcaaaattgttaagtcattct 571  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  44973362 agtaaaaacagatggaagaaaaacggtatttaattgaagatgaatctcctattcaaaattgttaagtcattct 44973290  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 44973453 - 44973397
Alignment:
Q  437 agagagaattgctcttctcccatctatttttgctcattcatatttagaaatacacct 493  Q
    |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||    
T  44973453 agagagaattgctcttctcccatctatttttgcttattcatgttaaaaaatacacct 44973397  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 52186857 - 52186893
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    |||||||||||||||||||||| | ||||||||||||    
T  52186857 agagaattgctcttctcccatccagttttgctcattc 52186893  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 42096870 - 42096834
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    |||||||||||||||||||||||||||||||||||||    
T  42096870 agagaattgctcttctcccatctatttttgctcattc 42096834  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 959084 - 959115
Alignment:
Q  443 aattgctcttctcccatctatttttgctcatt 474  Q
    ||||||||||||||||||||||||||||||||    
T  959084 aattgctcttctcccatctatttttgctcatt 959115  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 474
Target Start/End: Complemental strand, 33648353 - 33648318
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcatt 474  Q
    |||||||||||||||| |||||||||||||||||||    
T  33648353 agagaattgctcttctaccatctatttttgctcatt 33648318  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 43635737 - 43635768
Alignment:
Q  443 aattgctcttctcccatctatttttgctcatt 474  Q
    ||||||||||||||||||||||||||||||||    
T  43635737 aattgctcttctcccatctatttttgctcatt 43635768  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 475
Target Start/End: Original strand, 31756771 - 31756806
Alignment:
Q  440 gagaattgctcttctcccatctatttttgctcattc 475  Q
    ||||||||||||||||||||||||||||||||||||    
T  31756771 gagaattgctcttctcccatctatttttgctcattc 31756806  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 16862862 - 16862809
Alignment:
Q  440 gagaattgctcttctcccatctatttttgctcattcatatttagaaatacacct 493  Q
    |||||||||| ||||||||||| |||||||||||||  ||  ||||||||||||    
T  16862862 gagaattgcttttctcccatctgtttttgctcattcccatcaagaaatacacct 16862809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 3756550 - 3756514
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    |||||||||||||||||||| || |||||||||||||    
T  3756550 agagaattgctcttctcccacctgtttttgctcattc 3756514  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 5995270 - 5995233
Alignment:
Q  440 gagaattgctcttctcccatctatttttgctcattcat 477  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5995270 gagaattgctcttctcccatctttttttgctcattcat 5995233  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 12750330 - 12750294
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12750330 agagaattgctcttctcccatctgtttttgctcattc 12750294  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Complemental strand, 3607116 - 3607085
Alignment:
Q  443 aattgctcttctcccatctatttttgctcatt 474  Q
    ||||||||||||||||||||||||||||||||    
T  3607116 aattgctcttctcccatctatttttgctcatt 3607085  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 8110080 - 8110116
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  8110080 agagatttgctattctcccatctatttttgctcattc 8110116  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 33699489 - 33699453
Alignment:
Q  439 agagaattgctcttctcccatctatttttgctcattc 475  Q
    |||||||||||||||| |||||| |||||||||||||    
T  33699489 agagaattgctcttcttccatctgtttttgctcattc 33699453  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Complemental strand, 15398420 - 15398389
Alignment:
Q  443 aattgctcttctcccatctatttttgctcatt 474  Q
    ||||||||||||||||||||||||||||||||    
T  15398420 aattgctcttctcccatctatttttgctcatt 15398389  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Original strand, 7599609 - 7599642
Alignment:
Q  440 gagaattgctcttctcccatctatttttgctcat 473  Q
    ||||||||||||||| ||||||||||||||||||    
T  7599609 gagaattgctcttcttccatctatttttgctcat 7599642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 28228964 - 28228927
Alignment:
Q  436 aagagagaattgctcttctcccatctatttttgctcat 473  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  28228964 aagagagaattgctcttctcccatctgtttttgttcat 28228927  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 35446951 - 35446987
Alignment:
Q  440 gagaattgctcttctcccatctatttttgctcattca 476  Q
    |||||||||||||||||||| | ||||||||||||||    
T  35446951 gagaattgctcttctcccatttgtttttgctcattca 35446987  T

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