View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9267_low_6 (Length: 538)
Name: NF9267_low_6
Description: NF9267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9267_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 49279577 - 49279056
Alignment:
| Q |
1 |
agctagagcaatatttgagtctgtaattgctcgaccagagcctgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgagaga |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279577 |
agctagagcaatatttgagtctgcaattgctcgaccagagcatgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgagaga |
49279478 |
T |
|
| Q |
101 |
acaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataaggcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279477 |
acaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataaggcgg |
49279378 |
T |
|
| Q |
201 |
gtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaagagaagaaag |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279377 |
gtttagaacaaaagaaacaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacatcatcagctccagattcaagagaagaaag |
49279278 |
T |
|
| Q |
301 |
ggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagcgacagaag |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279277 |
ggcgatgcttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagcgacagaag |
49279178 |
T |
|
| Q |
401 |
agactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaagaagcaaa |
500 |
Q |
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| T |
49279177 |
agactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaagaagcaaa |
49279078 |
T |
|
| Q |
501 |
aattgtcatgtagtgtggcttg |
522 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49279077 |
aattgtcatgtagtgtggcttg |
49279056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 49276020 - 49275503
Alignment:
| Q |
1 |
agctagagcaatatttgagtctgtaattgctcgaccaga---------gcctgagttgttatggaaggcattccttgattttgagactgctaagattgaa |
91 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
49276020 |
agctagagcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagactgctaagtgtgaa |
49275921 |
T |
|
| Q |
92 |
tttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctactt |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49275920 |
tttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctactt |
49275821 |
T |
|
| Q |
192 |
ataaggcgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaag |
291 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49275820 |
ataaagcgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacatcatcagctccagattcaag |
49275721 |
T |
|
| Q |
292 |
agaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaag |
391 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
49275720 |
agaagaaagggcgatgcttttggtgaaatggcttaacttggaggcttcatctggagagttgggtgatgttagcttggtcctgcctaagctgcccaagaag |
49275621 |
T |
|
| Q |
392 |
cgacagaaga---gactaaaagtggctgcccaagatggttcttttagaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatc |
488 |
Q |
| |
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| |||||||| ||| |||| | || || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
49275620 |
caacagaagaagagacgaaaacttactaccgaagatggttcttctagaattgaagaatttttcaactatcgattccctgaggaaactcaggtaaaccatc |
49275521 |
T |
|
| Q |
489 |
tcaagaagcaaaaattgt |
506 |
Q |
| |
|
||||||||||||| |||| |
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| T |
49275520 |
tcaagaagcaaaagttgt |
49275503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 34790461 - 34790612
Alignment:
| Q |
241 |
ggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttc |
340 |
Q |
| |
|
|||||||||||| ||||| | || ||| ||||||||||||| || || |||||||||||| ||| | |||| ||||||||||||||||||||||| |
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| T |
34790461 |
ggtgtttgaggatgctctaaaccacttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttca |
34790560 |
T |
|
| Q |
341 |
tctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagc |
392 |
Q |
| |
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||||| ||| | |||||||| |||||||||| | |||||||||||||||||| |
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|
| T |
34790561 |
tctggggagctaggtgatgtcagcttagtccagtctaagctgcccaagaagc |
34790612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 34790146 - 34790274
Alignment:
| Q |
57 |
aggcattccttgattttgagactgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatg |
156 |
Q |
| |
|
|||||| | |||||||||| |||| | || ||||||||||||| ||||||||| ||||||||| ||| | || | | |||||| |||| || |||| |
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| T |
34790146 |
aggcatacgttgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagca---cttgaaggtatg |
34790242 |
T |
|
| Q |
157 |
gataagctatgcagagtttgaagcaacagcta |
188 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
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| T |
34790243 |
gatgagctatgcagagtttgaagcaacagcta |
34790274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 34790868 - 34790927
Alignment:
| Q |
434 |
agaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaag |
493 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
34790868 |
agaatcgaagaattcatcgactatctattccctgaggaaacacagacaaccaatctcaag |
34790927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 392
Target Start/End: Complemental strand, 2288312 - 2288161
Alignment:
| Q |
241 |
ggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttc |
340 |
Q |
| |
|
|||||||||||| ||||| | || ||| |||||||||||| |||| || |||||||||||| ||| | || | ||||||||||||||||||||||| |
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|
| T |
2288312 |
ggtgtttgaggatgctctaaaccacttcagatcatcagctccggatttaaaagaagaaagggcaatgctattagagaaatggctcaacttggaggcttca |
2288213 |
T |
|
| Q |
341 |
tctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagc |
392 |
Q |
| |
|
||||| ||| | |||||||| |||||||||| | |||||||||||||||||| |
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|
| T |
2288212 |
tctggggagctaggtgatgtcagcttagtccagtctaagctgcccaagaagc |
2288161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 2287905 - 2287845
Alignment:
| Q |
434 |
agaattgaagaatttttcgactatcgattccctgaggaaactcaggcaacccatctcaaga |
494 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||||| || ||||| ||||||||| |
|
|
| T |
2287905 |
agaatcgaagaatttatcgactatctattccctgaggaaacgcatacaaccaatctcaaga |
2287845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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