View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9268_high_2 (Length: 356)
Name: NF9268_high_2
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 2391062 - 2390723
Alignment:
| Q |
1 |
aataactgaattattaggcctaacctaacggtgccaaaaatatataactctttgtatctcttgatttttgcttagtaaatagataaacagttacaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391062 |
aataactgaattattaggcctaac-----ggtgccaaaaatatataactctttgtatctcttgatttttgcttagtaaatagataaacagttacaatctt |
2390968 |
T |
|
| Q |
101 |
tatttctagatcacata----tagttggaagaaattggcctttcattttcaatcttcacgaaaaaactttgtttgtcacaagaaagttgtcatgggaagc |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2390967 |
tatttctagatcacatacatatagttggaagaaattggcctttcattttcaatcttcacgaaaaaactttgtctgtcacaagaaagttgtcatgggaagc |
2390868 |
T |
|
| Q |
197 |
ttgtgatttttcatctgctgaaccaattctgtcacatcaaagttggttttcttaacttctgataaatcagtttttggtgttcataacttagaatttagaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2390867 |
ttgtgatttttcatctgctgaaccaattctgtcacatcaaagttggttttcttaacttctgataaatcagtttttggtgttcataacttagaatttagaa |
2390768 |
T |
|
| Q |
297 |
acagaggaaaaaatagagatacagtttcttgtttttccttgaatt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2390767 |
acagaggaaaaaatagagatacagtttcttttttttccttgaatt |
2390723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University