View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9268_low_1 (Length: 749)
Name: NF9268_low_1
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_low_1 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 14 - 724
Target Start/End: Original strand, 6496923 - 6497640
Alignment:
| Q |
14 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtat-ttacatgaatatgactgaaattaatccaacaact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6496923 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtatattacatgaatatgactgaaattaatccaacaact |
6497022 |
T |
|
| Q |
113 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497023 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
6497122 |
T |
|
| Q |
213 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497123 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattctcttgaaca |
6497222 |
T |
|
| Q |
313 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497223 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc |
6497322 |
T |
|
| Q |
413 |
tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataatacacttctacatgaaatatat------gatgacatgaaaagtatg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
6497323 |
tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataatacacttctacatgaaatatatgatgacgatgacataaaaagtatg |
6497422 |
T |
|
| Q |
507 |
acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497423 |
acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat |
6497522 |
T |
|
| Q |
607 |
acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaatttggacaagtagcctcaataaagaaagtttt |
706 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497523 |
acatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaatttggacaagtagcctcaataaagaaagtttt |
6497622 |
T |
|
| Q |
707 |
gttcacaatcttgtatat |
724 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6497623 |
gttcacaatcttgtatat |
6497640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 204 - 675
Target Start/End: Original strand, 6510100 - 6510574
Alignment:
| Q |
204 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510100 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
6510199 |
T |
|
| Q |
304 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
403 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || | |||||||||| |||||||||| || || |
|
|
| T |
6510200 |
tcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaa |
6510299 |
T |
|
| Q |
404 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tacacttct--acatgaaatatatgatgacatgaaa |
500 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||| | || ||||||||||| | ||||||| |||||||| |||||| ||||||||| |
|
|
| T |
6510300 |
tccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaa |
6510399 |
T |
|
| Q |
501 |
agtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaa |
600 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| ||| |
|
|
| T |
6510400 |
agtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaa |
6510499 |
T |
|
| Q |
601 |
ctgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
675 |
Q |
| |
|
|| || ||||| || || |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
6510500 |
ctaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaat |
6510574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 115 - 430
Target Start/End: Original strand, 6514384 - 6514690
Alignment:
| Q |
115 |
cgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatgaa |
214 |
Q |
| |
|
|||||| | |||| ||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| | | ||||||| |
|
|
| T |
6514384 |
cgaggaaatagctgtgtatttgaagccccattgactgattcttgagcagaactatgacctgacgatttcatatcttgaggccct---------atatgaa |
6514474 |
T |
|
| Q |
215 |
atgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacaca |
314 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6514475 |
atgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaacaca |
6514574 |
T |
|
| Q |
315 |
aagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctc |
414 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| |||| ||||||||||| || |||||||||||| ||| |||||| |||||||||||||| ||| |
|
|
| T |
6514575 |
aagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaatttctc |
6514674 |
T |
|
| Q |
415 |
catgcctgcacaaatt |
430 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
6514675 |
catgcctacacaaatt |
6514690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 226 - 467
Target Start/End: Original strand, 6502468 - 6502709
Alignment:
| Q |
226 |
aaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa |
325 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||||||||||| |||||||||| |||| || | ||| |||||||||||||||||||||||||| |
|
|
| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa |
6502567 |
T |
|
| Q |
326 |
tatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcac |
425 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| ||||| ||||||| |||||||||| ||| |
|
|
| T |
6502568 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacac |
6502667 |
T |
|
| Q |
426 |
aaatttgtccaaacgcaaataaaatactaggttagatataat |
467 |
Q |
| |
|
|||||| |||| | ||| ||| || ||| |||||||||||| |
|
|
| T |
6502668 |
aaatttatccagatgcatatatcattctatgttagatataat |
6502709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 498 - 675
Target Start/End: Original strand, 6502773 - 6502950
Alignment:
| Q |
498 |
aaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccg |
597 |
Q |
| |
|
|||| |||||||||||||||| || ||||| || ||||||||| |||| ||||||| ||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
6502773 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
6502872 |
T |
|
| Q |
598 |
aaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
675 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6502873 |
aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
6502950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 476 - 680
Target Start/End: Original strand, 6514774 - 6514978
Alignment:
| Q |
476 |
acatgaaatatatgatgacatgaaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttac |
575 |
Q |
| |
|
|||| ||| ||||||| ||||| || ||||||||||||||||||| ||||| || ||||||||| |||| || ||| ||| ||||||| ||||||||| |
|
|
| T |
6514774 |
acataaaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttac |
6514873 |
T |
|
| Q |
576 |
gatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
675 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||||| || |||||||||||| ||| | ||||| || ||||||||||| |||||||| |||||| |
|
|
| T |
6514874 |
aatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaat |
6514973 |
T |
|
| Q |
676 |
ttgga |
680 |
Q |
| |
|
|||| |
|
|
| T |
6514974 |
atgga |
6514978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 547 - 670
Target Start/End: Complemental strand, 6525651 - 6525528
Alignment:
| Q |
547 |
cgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatatt |
646 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
6525651 |
cgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatact |
6525552 |
T |
|
| Q |
647 |
caggtgccatatatccactacaaa |
670 |
Q |
| |
|
| ||||||||||||||||| |||| |
|
|
| T |
6525551 |
ccggtgccatatatccactgcaaa |
6525528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 6526001 - 6525868
Alignment:
| Q |
247 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
346 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| || || ||||||| |||| |
|
|
| T |
6526001 |
gaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattattt |
6525902 |
T |
|
| Q |
347 |
catttcgtgaatcattgtttaacgtgggatctat |
380 |
Q |
| |
|
| || ||||||||||||||| ||||||||||| |
|
|
| T |
6525901 |
cgttcactgaatcattgtttaatgtgggatctat |
6525868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 567 - 665
Target Start/End: Complemental strand, 47775427 - 47775329
Alignment:
| Q |
567 |
accacttacgatttcaagaaccaatataccgaaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccact |
665 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||| || ||||| || || || ||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
47775427 |
accacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccact |
47775329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 47771647 - 47771526
Alignment:
| Q |
247 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
346 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| |||||||| || ||||||| |||| |
|
|
| T |
47771647 |
gaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattattt |
47771548 |
T |
|
| Q |
347 |
catttcgtgaatcattgtttaa |
368 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
47771547 |
catttgctgaaatattgtttaa |
47771526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 47775799 - 47775678
Alignment:
| Q |
247 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
346 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
47775799 |
gaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattattt |
47775700 |
T |
|
| Q |
347 |
catttcgtgaatcattgtttaa |
368 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
47775699 |
catttgctgaaatattgtttaa |
47775678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 429
Target Start/End: Original strand, 47710892 - 47711017
Alignment:
| Q |
304 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
403 |
Q |
| |
|
||||||||||| ||||| |||| || || ||||||| ||||||||| ||||| ||||| |||| | |||||||| ||| |||| || |||||| |
|
|
| T |
47710892 |
tcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtaccctccc |
47710991 |
T |
|
| Q |
404 |
tccaattcctccatgcctgcacaaat |
429 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
47710992 |
tccaactcctccatgcctgcacaaat |
47711017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 204 - 675
Target Start/End: Original strand, 11780 - 12254
Alignment:
| Q |
204 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11780 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
11879 |
T |
|
| Q |
304 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
403 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| || |||| |
|
|
| T |
11880 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttcct |
11979 |
T |
|
| Q |
404 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tacacttct--acatgaaatatatgatgacatgaaa |
500 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||| | || ||||||||||| | ||||||| |||||||| |||||| ||||||||| |
|
|
| T |
11980 |
tccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaa |
12079 |
T |
|
| Q |
501 |
agtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaa |
600 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||||||||| |||| ||||||||||||||||||| ||||||||| ||||| | |||||||||||| ||| |
|
|
| T |
12080 |
agtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaa |
12179 |
T |
|
| Q |
601 |
ctgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
675 |
Q |
| |
|
|| || ||||| || || |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
12180 |
ctaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaat |
12254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 204 - 467
Target Start/End: Original strand, 4124 - 4387
Alignment:
| Q |
204 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
4223 |
T |
|
| Q |
304 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
403 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| ||||| |
|
|
| T |
4224 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctc |
4323 |
T |
|
| Q |
404 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataat |
467 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||| | ||| ||| || ||| |||||||||||| |
|
|
| T |
4324 |
tccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataat |
4387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 498 - 675
Target Start/End: Original strand, 4452 - 4629
Alignment:
| Q |
498 |
aaaagtatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccg |
597 |
Q |
| |
|
|||| |||||||||||||||| || ||||| || ||||||||| |||| ||||||| ||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
4452 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatatacca |
4551 |
T |
|
| Q |
598 |
aaactgaatacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaat |
675 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4552 |
aaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
4629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 506 - 668
Target Start/End: Original strand, 28859701 - 28859863
Alignment:
| Q |
506 |
gacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaa |
605 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||| ||| | | ||||||| ||| || ||| ||||||| || |||||||||| | ||| ||||| || |
|
|
| T |
28859701 |
gacttacaaagctcaatagatcctccgtattttccccgtgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaa |
28859800 |
T |
|
| Q |
606 |
tacatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca |
668 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
28859801 |
gacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatccgctaca |
28859863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
292 |
ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaa |
357 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||||| |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 668
Target Start/End: Original strand, 28854315 - 28854476
Alignment:
| Q |
507 |
acttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaat |
606 |
Q |
| |
|
||||||||||||| |||||| ||| ||| | ||| ||| || ||||||| || ||| ||||||| || |||||||| | || ||| |||||||| |
|
|
| T |
28854315 |
acttacaaagctcaatagatcctccgtaatttccccatgatgagtgccactattctttaggccacttataatctcaagaactagtacaccaaaactgaag |
28854414 |
T |
|
| Q |
607 |
acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca |
668 |
Q |
| |
|
|||||||| || |||||||||| ||| ||||| |||| |||||||||||||| || ||||| |
|
|
| T |
28854415 |
acatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctaca |
28854476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 665
Target Start/End: Original strand, 27368356 - 27368414
Alignment:
| Q |
607 |
acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccact |
665 |
Q |
| |
|
|||||||| || || ||||||| ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
27368356 |
acatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccact |
27368414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 28828714 - 28828775
Alignment:
| Q |
607 |
acatctgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactaca |
668 |
Q |
| |
|
|||||||| ||||| ||||||| ||| ||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
28828714 |
acatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccactaca |
28828775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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