View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9268_low_11 (Length: 201)
Name: NF9268_low_11
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 37536293 - 37536137
Alignment:
| Q |
17 |
agatgagatcaccattcctttgagaaagtgagatacaaatcttgagcaaatttattaatacatcagatcctccacctggtcatatgtactatttttagat |
116 |
Q |
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| T |
37536293 |
agatgagatcactattcctttgagaaagtgagatacaaatcttgagcaaatttgttaatacatcagatcctccacctggtcatatgtactatttttggat |
37536194 |
T |
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| Q |
117 |
ttggctcctctaaaatgatgagtgctccgaatatgatgcaaaattataactattgaa |
173 |
Q |
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| T |
37536193 |
ttggctcctctaaaatgatgagtgctccgaatatgatgcaaaattataactattgaa |
37536137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 37645411 - 37645251
Alignment:
| Q |
17 |
agatgagatcaccattcctttgagaaagtgagatacaaatcttgagcaaatttattaatacatcagatcctccacctggtcatatgtactatttttagat |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37645411 |
agatgagatcactattcctttgagaaagtgagatacaaatcttgagcaaattg-ttaatacatcagatcctccacctggtcatatgtactatttttggat |
37645313 |
T |
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| Q |
117 |
ttggctcctctaaaatgatgagtgctcc-----gaatatgatgcaaaattataactattgaa |
173 |
Q |
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| T |
37645312 |
ttggctcctctaaaatgatgagtgctcctcagagaatatgatgcaaaattataactattgaa |
37645251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 37827081 - 37826925
Alignment:
| Q |
17 |
agatgagatcaccattcctttgagaaagtgagatacaaatcttgagcaaatttattaatacatcagatcctccacctggtcatatgtactatttttagat |
116 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
37827081 |
agatgacatcactattcctttgagaaagtgagatacaaatcttgagcaaatttgttaatacatcagatcctccacctgggcatatgtactatttttggat |
37826982 |
T |
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| Q |
117 |
ttggctcctctaaaatgatgagtgctccgaatatgatgcaaaattataactattgaa |
173 |
Q |
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||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
37826981 |
ttgcctcctctaaaatggtgagtgctcagaatatgatgcaaaatcataactattgaa |
37826925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 37620638 - 37620563
Alignment:
| Q |
102 |
gtactatttttagatttggctcctctaaaatgatgagtgctcc-----gaatatgatgcaaaattataactattga |
172 |
Q |
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| T |
37620638 |
gtactatttttggatttggctcctctaaaatgatgagtgctccttagagaatatgatgcagaattataactattga |
37620563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 37796451 - 37796376
Alignment:
| Q |
102 |
gtactatttttagatttggctcctctaaaatgatgagtgctcc-----gaatatgatgcaaaattataactattga |
172 |
Q |
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| T |
37796451 |
gtactatttttggatttggctcctctaaaatgatgagtgctccttagagaatatgatgcagaattataactattga |
37796376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 37597442 - 37597406
Alignment:
| Q |
16 |
cagatgagatcaccattcctttgagaaagtgagatac |
52 |
Q |
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| T |
37597442 |
cagatgagatcactattccttagagaaagtgagatac |
37597406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 37721134 - 37721098
Alignment:
| Q |
16 |
cagatgagatcaccattcctttgagaaagtgagatac |
52 |
Q |
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| T |
37721134 |
cagatgagatcactattccttagagaaagtgagatac |
37721098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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