View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9268_low_2 (Length: 596)
Name: NF9268_low_2
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 34533807 - 34533242
Alignment:
| Q |
20 |
gatcgttgtcggggtcagctaacccttcgtacatcttcatcataggtggttttcgaaaagaccgaagcaaggttttatggtgactcttgtgaatgtttcg |
119 |
Q |
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| T |
34533807 |
gatcgttgttggggtcagctaacccttcgtacttcttcatcataggtggttttcgaaaagaccgaagcaaggttttatggtgactcttgtgaatgtttcg |
34533708 |
T |
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| Q |
120 |
ttcttgaatatgttttcttcccggtcataaaattatagggtttgccaacatttcttccttgggcagttgatccctcctcccatgtcgccccttcgtaatg |
219 |
Q |
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| T |
34533707 |
ttcttgaatatgttttcttcccggtcataaaattatagggcttgccaacatttcttccttgggcagttgatccctcctcccatgtcgccccttcgtaatg |
34533608 |
T |
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| Q |
220 |
agggggtcgattgatggttggacgagagtctgtgtctttgtggagccacaaatctccttacttctggagttctttctttctctttatttaattttgnnnn |
319 |
Q |
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| T |
34533607 |
agggggtcgattgatggtcggacgagagtctgcgtctttgtggagccacaaatctccttacttctggagttctttctttctctttatttaattttg--tt |
34533510 |
T |
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| Q |
320 |
nnnnnnnaacaagaaaatttattaaaagacaaagtccctattcaaggtgaatagagacaagcaagacacaaacaataaaacatccgataaaccaaccaaa |
419 |
Q |
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| T |
34533509 |
tttttttaacaagaaaatttattaaaagataaagtcactattcaaggtgaatagagacaagcaagacacaaacaataaaacatccgacaaaccaaccaaa |
34533410 |
T |
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| Q |
420 |
aacaccctctacataaggcgaccaccaaaaccataaaatcta-tacacaaaaatcaatttcaactccaaaagcaaaagtcaaactcactaatctccaaca |
518 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34533409 |
aacaccctctacatagggctaccaccaaaaccataaaatctattacacaaaaatcaatttcaactccaaaagcaaaagtcaaactctctaatctccaacg |
34533310 |
T |
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| Q |
519 |
taaagtgccaacattaaaaacaacaacttgttgctcgtaccaaaactcctctaacataaccaccaaac |
586 |
Q |
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| T |
34533309 |
taaagtgccaacattaaaaacaacaacttgttgctcgtaccaaaactcctctaacataaccaccaaac |
34533242 |
T |
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