View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9268_low_3 (Length: 536)
Name: NF9268_low_3
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 341 - 536
Target Start/End: Complemental strand, 47811373 - 47811178
Alignment:
| Q |
341 |
ccacaaaacttcagcaacaatggtagcagcttcagcatcagaaacacaagcttctctaaccctaactaatatttcccccttaaaactccttttctctctt |
440 |
Q |
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| T |
47811373 |
ccacaaaacttcagcaacaatggtagcagcttcagcatcagaaacacaagcttctctaaccctaactaatatttcacccttaaaactccttttctctctt |
47811274 |
T |
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| Q |
441 |
tgtctcagcccttctccaacctccaattgcaccgcgaatctcgctacacagctcgcaaattcactctctaatctttgcaactcaacaaatttctca |
536 |
Q |
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| T |
47811273 |
tgtctcagcccttctccaacctccaattgcactgcaaatctcgctacacagctcgcaaattcactctccaatctttgcaactcaacaaatttctca |
47811178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 47827770 - 47827612
Alignment:
| Q |
11 |
cacagaacaacaaagtgtgtgataatggatatatgggaaggaaatagtggtctggtatgttcctaactttcttgaggagtcgttttgcaatagttggttt |
110 |
Q |
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| T |
47827770 |
cacagaacaacaaagtgtgtgataatggatatctgggaaggaaatagtggtctggtatgttcctaactttcttggggagtcgttttgcaatagttggttt |
47827671 |
T |
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| Q |
111 |
gacattagggttttgctgcatctcaccgccaacgactttccaatccactcctttgaatg |
169 |
Q |
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| T |
47827670 |
gacattagggttttgctgcatctcaccgccaacggctttccaatccactcctttgaatg |
47827612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 47811543 - 47811452
Alignment:
| Q |
203 |
aaattgataacatgactcttttgtggaaaggaaaagaattcacattcagattagtctcatagttgaactacaaaattaagaactaataataa |
294 |
Q |
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| T |
47811543 |
aaattgataacatgactcttttgtggaaaggaaaagaattcacattcagattagtctcatagttgaactacaaaattaagaactaataataa |
47811452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 47811682 - 47811646
Alignment:
| Q |
168 |
tgcaacctatgtgaaacaaaccaaaaacaagagaaaa |
204 |
Q |
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| T |
47811682 |
tgcaacctacgtgaaacaaaccaaaaacaagagaaaa |
47811646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 2316311 - 2316153
Alignment:
| Q |
11 |
cacagaacaacaaagtgtgtgataatggatatatgggaaggaaatagtggtctggtatgttcctaactttcttgaggagtcgttttgcaatagttggttt |
110 |
Q |
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| T |
2316311 |
cacagaacaacaaagtgtgtgataatggatatctgggaaggaaatagtggtctggtatgttcctaactttcttggggagtcgttttgcaatagttggttt |
2316212 |
T |
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| Q |
111 |
gacattagggttttgctgcatctcaccgccaacgactttccaatccactcctttgaatg |
169 |
Q |
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| T |
2316211 |
gacattagggttttgctgcatctcaccgccaacggctttccaatccactcctttgaatg |
2316153 |
T |
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