View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9268_low_8 (Length: 243)
Name: NF9268_low_8
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9268_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11815060 - 11815284
Alignment:
| Q |
1 |
cgaaaacaatgtaaacaaaatatataattaataaggtctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagt |
100 |
Q |
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| T |
11815060 |
cgaaaacaatctaaataaaatatataattaataaggtctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagt |
11815159 |
T |
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| Q |
101 |
actttaattgcaataactatccagtacttcagatctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattt |
200 |
Q |
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| T |
11815160 |
actttaattgcaataactatccagtacttcagatctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattc |
11815259 |
T |
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| Q |
201 |
tggattcactatctcaagcctgtac |
225 |
Q |
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| T |
11815260 |
tggattcactatctcaagcctgtac |
11815284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 11826067 - 11826138
Alignment:
| Q |
135 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggatt |
206 |
Q |
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| T |
11826067 |
ctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatctggatt |
11826138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 11799285 - 11799356
Alignment:
| Q |
135 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggatt |
206 |
Q |
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| T |
11799285 |
ctttatcaccttggaaaggcaattgtctataggcttggataatggtaagcaagtaatagggcattctggatt |
11799356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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