View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9268_low_9 (Length: 218)

Name: NF9268_low_9
Description: NF9268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9268_low_9
NF9268_low_9
[»] chr6 (13 HSPs)
chr6 (17-218)||(2974329-2974530)
chr6 (17-218)||(2658540-2658741)
chr6 (17-218)||(2927482-2927683)
chr6 (17-218)||(3003339-3003540)
chr6 (17-218)||(2937782-2937983)
chr6 (17-218)||(2934921-2935122)
chr6 (21-218)||(2964835-2965032)
chr6 (17-216)||(2952255-2952457)
chr6 (36-218)||(2996928-2997110)
chr6 (20-171)||(2979216-2979364)
chr6 (18-218)||(2929632-2929832)
chr6 (17-180)||(2983188-2983351)
chr6 (60-106)||(2985693-2985739)
[»] scaffold0024 (2 HSPs)
scaffold0024 (17-218)||(34797-34998)
scaffold0024 (18-171)||(44533-44686)
[»] chr7 (1 HSPs)
chr7 (17-180)||(3339347-3339510)
[»] chr3 (2 HSPs)
chr3 (59-218)||(49613800-49613959)
chr3 (18-211)||(49618735-49618928)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 2974329 - 2974530
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
2974329 gtcattacccttatcagtcatatattattgattatcattttattttggattaccttataaatactagtacggatgtggatatacttgttcggagcaatat 2974428  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| |||||||||||| ||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
2974429 actgcaaaattggcttggagacagtgattctgttgctatcttatttaatggtcttggagaaaatattacaaattctaatatcagttctcatttctctatt 2974528  T
217 ct 218  Q
    ||    
2974529 ct 2974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 2658741 - 2658540
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||||||||||||||||||| |||||||  |  | ||||||| ||||||||||||||| ||| ||||||||||||||||||||  |  || ||    
2658741 gtcattacccttatgagtcatatattactgattatgttgctgttttggattaccttataaatactggtaaggatgtggatatacttgttccaaacaaaat 2658642  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| |||||||||||| ||| |||||||||||||||| |||||||| ||||||| | |||||| ||||  ||||||||| |||| |||||||| |||||    
2658641 actggaaaattggcttggagacagtgattctgtggctaacttgtttactggtctttgcaaaaatgttactcattgtaatagcagtcctcatttcactatt 2658542  T
217 ct 218  Q
    ||    
2658541 ct 2658540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 2927482 - 2927683
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| |||| |||||||||| |||||||| || | ||||||| ||||||||||||||| ||| |||||||||||||||||||| |||  | ||    
2927482 gtcattaccctgatgattcatatattactgattatcgttctgttttggattaccttataaatactggtaaggatgtggatatacttgttcagagggaaat 2927581  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| |||||  ||||| |||  ||||||||||||||| |||||||||||||||||| |||||| |||||  || ||  ||||||||||| |||||||||    
2927582 actggaaaatatgcttggagacggtgattctgtggctaacttgtttaatggtcttggtaaaaatgttacacgttctacaatcagttctcaattctctatt 2927681  T
217 ct 218  Q
    ||    
2927682 ct 2927683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 3003540 - 3003339
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| |||| ||||||||||  ||||||| || | ||||||| |||||||||||||||  || |||||||||||||||||||| |||  | ||    
3003540 gtcattaccctgatgattcatatattaccgattatcgttctgttttggattaccttataaatactgctaaggatgtggatatacttgttcagagcgaaat 3003441  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| |||||  ||||| ||| |||||||||||||||| |||||||||||||||||| ||| |||||| |  || ||  ||||||||||| |||||||||    
3003440 actggaaaatatgcttggagacagtgattctgtggctaacttgtttaatggtcttggcaaagatattatacgttctacaatcagttctcaattctctatt 3003341  T
217 ct 218  Q
    ||    
3003340 ct 3003339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 2937782 - 2937983
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| ||||||||||||||  |||||||  | || ||||||| ||||||||||||||  ||| ||||| || |||||||||| |||  || ||    
2937782 gtcattaccctcatgagtcatatattgctgattatgttgttgttttggattaccttataaataccggtaaggatgcgggtatacttgtttggaacaaaat 2937881  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| |||||||||||| ||| ||||||||||||||||  ||||||||||||||| | |||||| ||  | ||| | ||||||||||||| |||||||||    
2937882 actggaaaattggcttggagacagtgattctgtggctaatttgtttaatggtctttgcaaaaatgttgtatattctgatatcagttctcaattctctatt 2937981  T
217 ct 218  Q
    ||    
2937982 ct 2937983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 2934921 - 2935122
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| |||| |||||||| | |||||||  |  | |  |||| ||||||||||||||| |||||||||  ||||||||||||||||   | ||    
2934921 gtcattaccctgatgattcatatatcactgattatgttgctgtcatggattaccttataaatactggtacggatgctgatatacttgttcggaacgaaat 2935020  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||| | |||  |||||  ||||||||||||||||||| |||||||||||||||| | |||||| ||||| | | |||||||||||||||||||||||||    
2935021 actgcataatatgcttgcggatagtgattctgtggctaacttgtttaatggtctttggaaaaatgttacacaatctaatatcagttctcatttctctatt 2935120  T
217 ct 218  Q
    ||    
2935121 ct 2935122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 2964835 - 2965032
Alignment:
21 ttacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatatactg 120  Q
    ||||||||||||||||||||||| ||| |||  |  | ||||||| ||||||||||||||| | | |||||||||||||||||||| ||  || ||||||    
2964835 ttacccttatgagtcatatattactgactatgttgctgttttggattaccttataaatactggcaaggatgtggatatacttgttcagaacaaaatactg 2964934  T
121 aaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctattct 218  Q
     |||||  ||||| |||||||||||||||||||| ||||||||||||||||   ||| || ||| | ||| ||||||||||  ||| |||||||||||    
2964935 gaaaatatgcttggagatagtgattctgtggctaacttgtttaatggtctttccaaatatgttatacattctaatatcagtcttcaattctctattct 2965032  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 2952255 - 2952457
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| | ||||||||||||  |||||||  | || ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  ||||    
2952255 gtcattaccctgaggagtcatatattgctgattatgttgttgttttggattacattataaatactggtaccgatgtggatatacttgttcggagggatat 2952354  T
117 actgaaaaattggcttgaaga---tagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctct 213  Q
    |||  | |||  ||||| |||   ||||||||||||||||| |  |||||||||| || | |||||| ||  | ||| ||||||||||||||| ||||||    
2952355 actagataatatgcttggagaaagtagtgattctgtggctaacaggtttaatggtatttgcaaaaatgttgtatattctaatatcagttctcaattctct 2952454  T
214 att 216  Q
    |||    
2952455 att 2952457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 2997110 - 2996928
Alignment:
36 atatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatatactgaaaaattggcttgaa 135  Q
    |||||||| |||||||  || | ||||||| ||||||||||| ||| ||| |||||| |||||||||||||  |   | |||||| |||||||||||| |    
2997110 atatattactgattatgtttctgttttggattaccttataaacactggtaaggatgttgatatacttgttcacaaagaaatactggaaaattggcttgga 2997011  T
136 gatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctattct 218  Q
    || |||||||||||||||| |||||||||||||||| | | |||| ||  | ||   |||||||||||||| |||||||||||    
2997010 gacagtgattctgtggctaacttgtttaatggtctttgcataaatgttgtacataccaatatcagttctcaattctctattct 2996928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 2979216 - 2979364
Alignment:
20 attacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatatact 119  Q
    |||||||| ||||||||||||||| |||||||    || | || || ||||||||||||||  |||||||||||||||||||||||||||| || |||||    
2979216 attaccctcatgagtcatatattactgattatg---ttgtcttcgattaccttataaataccggtacggatgtggatatacttgttcggagcaaaatact 2979312  T
120 gaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtctt 171  Q
    | |||||| ||||| ||| ||| ||||||  ||||  |||||||||| ||||    
2979313 ggaaaatttgcttggagacagtcattctgctgctaaattgtttaatgatctt 2979364  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 2929632 - 2929832
Alignment:
18 tcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatata 117  Q
    |||||||||| |||||||||||||| ||||||||  |  |||| |||| |  |||||||||||| ||| ||| |  ||||||||| ||| ||   | |||    
2929632 tcattaccctcatgagtcatatattcttgattatgttactattatggattttcttataaatactggtaaggacgccgatatacttattcagaaagaaata 2929731  T
118 ctgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctattc 217  Q
    ||| |||||||| ||| ||| | | |||||||||||| | ||||||||||| || | ||| |||||| | ||| |||||||||| |||||||||||||||    
2929732 ctggaaaattggtttggagacaatcattctgtggctaacatgtttaatggtttttgcaaatatattatacattctaatatcagtcctcatttctctattc 2929831  T
218 t 218  Q
    |    
2929832 t 2929832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 2983188 - 2983351
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| |||||||||||||| ||||||||  | || ||||||| ||||||||||||| | ||| |||||||||| ||||| ||| ||   | ||    
2983188 gtcattaccctcatgagtcatatattcttgattatgttcttgttttggattaccttataaataatggtaaggatgtggatgtacttattcagaagcaaat 2983287  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaat 180  Q
    |||  |||| | ||||| |||  || | ||| ||||||||||||||||||||||| | ||||||    
2983288 actagaaaacttgcttggagacggtcaatctatggctatcttgtttaatggtctttgcaaaaat 2983351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 2985693 - 2985739
Alignment:
60 tttggactaccttataaatactagtacggatgtggatatacttgttc 106  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||    
2985693 tttggattaccttataaatactagtaaggatgcggatatacttgttc 2985739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 34998 - 34797
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||||||||||||||||||| |||||||  | || ||||||| | ||||||||||||| ||| ||||| |||||||||||||||||   | ||    
34998 gtcattacccttatgagtcatatattactgattatgttgttgttttggatttccttataaatactggtaaggatgcggatatacttgttcggaaagaaat 34899  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctatt 216  Q
    |||||  |||| ||||| ||| |||||||||||||||| |||||||||| ||||| | |||||| ||| | ||  |||||||||||||||||||||||||    
34898 actgactaatttgcttggagacagtgattctgtggctaacttgtttaatcgtctttgcaaaaatgttatacatcataatatcagttctcatttctctatt 34799  T
217 ct 218  Q
    ||    
34798 ct 34797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 44686 - 44533
Alignment:
18 tcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatata 117  Q
    |||||||||| |||| |||||||||||| |||||  |  ||||||||| ||||||||||||||| ||| |||||  ||||||| ||||||||| || |||    
44686 tcattaccctaatgaatcatatattattaattatgttgctattttggattaccttataaatactggtaaggatgcagatatacatgttcggagcaaaata 44587  T
118 ctgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtctt 171  Q
    ||| |||||| ||||| ||| ||| ||| ||||||||  |||||||||| ||||    
44586 ctggaaaatttgcttggagacagtcattatgtggctaatttgtttaatgatctt 44533  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 3339347 - 3339510
Alignment:
17 gtcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatat 116  Q
    ||||||||||| |||||||||||||||||||||||  |  | ||||||| | ||||||||||||||||| |||||||||||||||||||  |||  | ||    
3339347 gtcattaccctgatgagtcatatattattgattatgttgcttttttggatttccttataaatactagtatggatgtggatatacttgttaagagcgaaat 3339446  T
117 actgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaat 180  Q
    |||  |||||||||||| ||| ||||||||||||||||  ||||||||||||||| | ||||||    
3339447 actagaaaattggcttgcagacagtgattctgtggctaaattgtttaatggtctttgcaaaaat 3339510  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 49613800 - 49613959
Alignment:
59 ttttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatatactgaaaaattggcttgaagatagtgattctgtggctatctt 158  Q
    ||||||| | |||||| |||||| | | |||||||||||||||||||| ||  || ||||||   ||||||||||  ||||||||||||||||||| |||    
49613800 ttttggatttccttattaatactggcaaggatgtggatatacttgttcagaagaaaatactggtgaattggcttggggatagtgattctgtggctaactt 49613899  T
159 gtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttctctattct 218  Q
    ||||||| ||||| | |||||| ||||| |||   || |||||||||| | |||||||||    
49613900 gtttaatagtctttggaaaaatgttacacatttgtatttcagttctcagtactctattct 49613959  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 49618735 - 49618928
Alignment:
18 tcattacccttatgagtcatatattattgattatcattttattttggactaccttataaatactagtacggatgtggatatacttgttcggagtaatata 117  Q
    |||||||||| |||| || ||||||  |||||||  || | ||||||| |||||||||||||   ||| ||||| |||||||||||||| |||    |||    
49618735 tcattaccctcatgattcctatatttatgattatatttctgttttggattaccttataaatatcggtagggatgcggatatacttgttcagagaggaata 49618834  T
118 ctgaaaaattggcttgaagatagtgattctgtggctatcttgtttaatggtcttggaaaaaatattacaaattgtaatatcagttctcatttct 211  Q
    | | | |||  ||||| ||| |||||||||||||| | ||||| |||||||||| | |||||| || || ||   ||| |||||||||||||||    
49618835 caggataatatgcttgcagacagtgattctgtggcaaacttgtataatggtctttggaaaaatgtttcacatataaatttcagttctcatttct 49618928  T

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