View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_high_1 (Length: 386)
Name: NF9269_high_1
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 26566692 - 26566307
Alignment:
| Q |
1 |
tttcgggtcgagacgtgtatgaccctccgaagaaaacaaggtccggtacgtatacattgaagagctgtgttagactgcggatgaagtgaccccattgcca |
100 |
Q |
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| T |
26566692 |
tttcgggtcgagacgtgtatgaccctccgaagaaaacaaggtccggtacgtatacattgaagagctgtgttagactgcggatgaagtgaccccattgcca |
26566593 |
T |
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| Q |
101 |
taaagcattggcgccaaggccatggattaggagtaggtttggttttgattcggttcgggttttgggtatccaacaatgcattatagttccgtcttttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26566592 |
taaagcattggcgccaaggccatggattaggagtaggtttggttttgattcggttcgggttttgggtatccaacaatgcattatagttccatcttttagg |
26566493 |
T |
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| Q |
201 |
tcagttattgtggaacggagacctgcaccggtgaatgttgaccggtagcaccagtttcttgtttcggttaaactgaaacactttgtcatactggttggtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26566492 |
tcagttattgtggaacggagacctgcaccggtgaatgttgaccggtaacaccagtttcttgtttcggttaaactgaaacactgtgtcatactggttggtt |
26566393 |
T |
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| Q |
301 |
agtagtattaactaactaactaacacaactataatttctagaacttgctagaaaataaaagttaaaataacaaaaatggtacaata |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26566392 |
agtagtattaactaactaactaacacaactataatttctagaacttgctagaaaataaaagttaaaataacaaaaatggtacaata |
26566307 |
T |
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