View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9269_low_1 (Length: 660)

Name: NF9269_low_1
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9269_low_1
NF9269_low_1
[»] chr2 (2 HSPs)
chr2 (159-644)||(5044042-5044528)
chr2 (261-299)||(7769479-7769517)
[»] chr8 (5 HSPs)
chr8 (163-350)||(35897568-35897755)
chr8 (174-350)||(35903597-35903773)
chr8 (176-270)||(35900530-35900624)
chr8 (420-484)||(35897425-35897489)
chr8 (429-484)||(35903455-35903510)
[»] chr3 (2 HSPs)
chr3 (261-350)||(51478453-51478544)
chr3 (425-484)||(36351632-36351691)
[»] chr4 (1 HSPs)
chr4 (261-350)||(23993168-23993259)


Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 159 - 644
Target Start/End: Complemental strand, 5044528 - 5044042
Alignment:
Q  159 acataataaagcaacaaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatc 258  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5044528 acataataaaacaacaaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatc 5044429  T
Q  259 ccaagaaaagggaaacaccagtaataaagaggctcctcattgagttcatgttagtaaactgcaaaaatgatagccccacagaagctgaaaaacacaaaat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5044428 ccaagaaaagggaaacaccagtaataaagaggctcctcattgagttcatgttagtaaactgcaaaaatgatagccccacagaagctgaaaaacacaaaat 5044329  T
Q  359 cattagtcacagcaaagagatagaaaaggctcaaacaaagttaaaggtggatttttattaatactcaccaacaaggccaaacaggacacagtacatagca 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5044328 cattagtcacagcaaagagatagaaaaggctcaaacaaagttaaaggtggatttttattaatactcaccaacaaggccaaacaggacacagtacatagca 5044229  T
Q  459 gcaaaaatagggaagggtattgatgcnnnnnnngcaccaaattttcctgaaaaaagaca-tgaagtatgcataaattattgttgcttgtaagtgaaaatt 557  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  5044228 gcaaaaatagggaagggtattgatgcaaaaaaagcaccaaattttcctgaaaaaagaaattgaagtatgcaaaaattattgttgcttgtaagtgaaaatt 5044129  T
Q  558 atgaaataaaaatcttgaaaaagtacattaatattgataggattgatatacagtatacacaactaatcactcacctagcattgagaa 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5044128 atgaaataaaaatcttgaaaaagtacattaatattgataggattgatatacagtatacacaactaatcactcacctagcattgagaa 5044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 7769517 - 7769479
Alignment:
Q  261 aagaaaagggaaacaccagtaataaagaggctcctcatt 299  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  7769517 aagaaaagggaaacaccagtgataaagaggttcctcatt 7769479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 163 - 350
Target Start/End: Complemental strand, 35897755 - 35897568
Alignment:
Q  163 aataaagcaacaaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatcccaa 262  Q
    |||||| ||| ||||||||||||| ||| || ||||||||||| |||||||||||| ||  |||| ||||||||||||| ||||||||||| || || ||    
T  35897755 aataaaacaagaaactcacccatccagctttggtatgagcaggaccatgaagggccctgatagtgtattctctgaaatattcaggaatagacaagcctaa 35897656  T
Q  263 gaaaagggaaacaccagtaataaagaggctcctcattgagttcatgttagtaaactgcaaaaatgatagccccacagaagctgaaaaa 350  Q
    |||||||| ||||||||| ||||||||| |||||||||| |||||||| || || ||||||||||||||||| |||||||||||||||    
T  35897655 gaaaagggcaacaccagtgataaagaggttcctcattgaattcatgttggtgaattgcaaaaatgatagccctacagaagctgaaaaa 35897568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 174 - 350
Target Start/End: Complemental strand, 35903773 - 35903597
Alignment:
Q  174 aaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatcccaagaaaagggaaa 273  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| |   |||| | ||||||||||  ||||||||||| || || |||||||||| ||    
T  35903773 aaactcacccatccagctttggtatgagcagggccatgaagggccctaatagtgtactctctgaaatgttcaggaatagacaagcctaagaaaagggcaa 35903674  T
Q  274 caccagtaataaagaggctcctcattgagttcatgttagtaaactgcaaaaatgatagccccacagaagctgaaaaa 350  Q
    |||||||||||||||||| ||||||||| ||| |||| || || | ||||||||| ||||  |||||||| ||||||    
T  35903673 caccagtaataaagaggcccctcattgaattcttgttggtgaatttcaaaaatgaaagccatacagaagccgaaaaa 35903597  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 35900624 - 35900530
Alignment:
Q  176 actcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatcccaagaaaaggg 270  Q
    |||||| |||| ||| || ||||||||||| ||||||| |||||||  |||| ||||||||||||| ||||||||||| || || ||||||||||    
T  35900624 actcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaagaaaaggg 35900530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 35897489 - 35897425
Alignment:
Q  420 tactcaccaacaaggccaaacaggacacagtacatagcagcaaaaatagggaagggtattgatgc 484  Q
    |||| ||| ||||| |||||||  |||||||| |||||||||||||||||||| |||||||||||    
T  35897489 tacttacctacaagaccaaacaaaacacagtatatagcagcaaaaatagggaatggtattgatgc 35897425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 35903510 - 35903455
Alignment:
Q  429 acaaggccaaacaggacacagtacatagcagcaaaaatagggaagggtattgatgc 484  Q
    ||||| |||||||  |||||||| |||||||||||||||||||| |||||||||||    
T  35903510 acaagaccaaacaaaacacagtatatagcagcaaaaatagggaatggtattgatgc 35903455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 51478453 - 51478544
Alignment:
Q  261 aagaaaagggaaacaccagtaataaagaggctcctcattgagttcatgtt--agtaaactgcaaaaatgatagccccacagaagctgaaaaa 350  Q
    |||||||||||||||||||| | ||||||| |||||||||| ||| ||||   || |  ||||||||| ||||||| |||||||||||||||    
T  51478453 aagaaaagggaaacaccagtgacaaagaggttcctcattgaattcttgttggtgtcagttgcaaaaattatagccctacagaagctgaaaaa 51478544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 484
Target Start/End: Complemental strand, 36351691 - 36351632
Alignment:
Q  425 accaacaaggccaaacaggacacagtacatagcagcaaaaatagggaagggtattgatgc 484  Q
    ||||||||||||||| || || ||||||| ||||||||| || ||||||||||| |||||    
T  36351691 accaacaaggccaaatagaacgcagtacaaagcagcaaatatcgggaagggtatagatgc 36351632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 23993168 - 23993259
Alignment:
Q  261 aagaaaagggaaacaccagtaataaagaggctcctcattgagttcatgtt--agtaaactgcaaaaatgatagccccacagaagctgaaaaa 350  Q
    |||||||||||||||||||| | ||||||| |||||||||| ||| ||||   || |  |||||| || ||||||| |||||||||||||||    
T  23993168 aagaaaagggaaacaccagtgacaaagaggttcctcattgaattcttgttggtgtgagttgcaaatattatagccctacagaagctgaaaaa 23993259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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