View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_10 (Length: 374)
Name: NF9269_low_10
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 39111220 - 39111563
Alignment:
| Q |
13 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
112 |
Q |
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| T |
39111220 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
39111319 |
T |
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| Q |
113 |
gacatgaattactcaacatcaataaatctcaatcactttctattagatcagctgttcaagaggtgaaaaatcatcttatttccttgatattttttaggtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39111320 |
gacatgaattactcaacatcaataaatctcaatcacttgctattagatcagctgttcaagaggtgaaaaatcatcttattt-cttgatattttttaggtt |
39111418 |
T |
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| Q |
213 |
aaatgtttctttaatctatatcaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
312 |
Q |
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| T |
39111419 |
aaatgtttctttaatctatatgaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
39111518 |
T |
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| Q |
313 |
attggagtaaaacctggatggacaagagttagttttccttattac |
357 |
Q |
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| T |
39111519 |
attggagtaaaacctggatggacaagagttagttttccttattac |
39111563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 39105215 - 39105351
Alignment:
| Q |
40 |
tttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatggacatgaattactcaacatcaataaat |
139 |
Q |
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| T |
39105215 |
tttgttgcaacattgttaaacgatctctttggaatacaatctcgaggtgggtgtgcttgtgctggaccttacggacatgatttgctcaacatcaatgaat |
39105314 |
T |
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| Q |
140 |
ctcaatcactttctattagatcagctgttcaagaggt |
176 |
Q |
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| T |
39105315 |
ctcaatcgcttgccgttagatcagcaattcaagaggt |
39105351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 39105562 - 39105605
Alignment:
| Q |
314 |
ttggagtaaaacctggatggacaagagttagttttccttattac |
357 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
39105562 |
ttggtgtaaaacccggatggaccagagttagttttccttattac |
39105605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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