View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_14 (Length: 317)
Name: NF9269_low_14
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 9941552 - 9941851
Alignment:
| Q |
1 |
gctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcacttt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
9941552 |
gctagtatagattttgcaacgcaattccaaaccttaaagcttgaaacataacatctattgcaggcaccaccgctttagcaaattttttctttatcacttt |
9941651 |
T |
|
| Q |
101 |
ctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaatcccaaa |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9941652 |
ctccattgcatcctaaaatcaccaaaa-ccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaatcccaaa |
9941750 |
T |
|
| Q |
201 |
gaaccttaagaaaaagataattcaccatatcaacaatattatgaaccaaaacaaggaaaatagaaaacactaaaacatggctaaatgaaagcataagata |
300 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9941751 |
gaaccttaagaaaaagagaattcaccatatcaaaaatattatgaaccaaaacaaggaaaatagaaaacactaaaacagggctaaatgaaagcataagata |
9941850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8208010 - 8208217
Alignment:
| Q |
1 |
gctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcacttt |
100 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| |||||||| |||| |
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| T |
8208010 |
gctattatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttattctttattgcttt |
8208109 |
T |
|
| Q |
101 |
ctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaa-tcccaa |
199 |
Q |
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||||||||||||||||||| |||||||| |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8208110 |
ctccattgcatcctaaaattaccaaaag-cttaataatgaaa-ggatgaaaagcatgactagtagatgcgaagttattgatgtgtaaactaaacccccaa |
8208207 |
T |
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| Q |
200 |
agaaccttaa |
209 |
Q |
| |
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|||| ||||| |
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| T |
8208208 |
agaatcttaa |
8208217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 9335260 - 9335302
Alignment:
| Q |
149 |
aaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
191 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
9335260 |
aaaaacatgactagtagatgtaaaggtattgatgtgtaaacta |
9335302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42363148 - 42363339
Alignment:
| Q |
1 |
gctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcacttt |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||| |||| |
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| T |
42363148 |
gctactatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttgttctttatcgcttt |
42363247 |
T |
|
| Q |
101 |
ctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaa |
193 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||| |||| || | |||| ||||||||||||||| |||||||||| | ||||||||||| |
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| T |
42363248 |
ctccattgcatcctaaaattaccaagagccttaataatgaaa-ggacgaaaagcatgactagtagatgtgaagttattggtatgtaaactaaa |
42363339 |
T |
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