View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_15 (Length: 250)
Name: NF9269_low_15
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 47462315 - 47462076
Alignment:
| Q |
10 |
ggacagtaacaagatttgatttgtctaaaaaactttcgtgaagttttcaggaacaattctttccctttaaatatcaatgcccttaacaaaatccacgcta |
109 |
Q |
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| T |
47462315 |
ggacagtaacaagatatgatttgtctaaaaaactttcatgaagttttcaggaacaattctttccctttaaatatcaatgcccttaacaaaatccacgcta |
47462216 |
T |
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| Q |
110 |
ggaaagtcacaagactttcccatgttaaacctcacctatgttttaatcatatttccttcattttttgagatcagagcttttccaaaagaatgcagaagaa |
209 |
Q |
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| T |
47462215 |
ggaaagtcacaagactttcccatgctaaatctcacctatgttttaatcatatttccttcattttttgagatcagaggttttcc-aaagaatgcagaagaa |
47462117 |
T |
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| Q |
210 |
gatgaggaataactttttgaaaataattattaaataataaa |
250 |
Q |
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| T |
47462116 |
gatgaggaataactttttgaaaataattattaaataataaa |
47462076 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 19580897 - 19580834
Alignment:
| Q |
19 |
caagatttgatttgtctaaaaaactttcgtgaagttttcaggaacaattctttccctttaaata |
82 |
Q |
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| T |
19580897 |
caagatttgattggtccaaaaaaattacgtgaaattttcgggaacaattctttccctttaaata |
19580834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 1862063 - 1862131
Alignment:
| Q |
14 |
agtaacaagatttgatttgtctaaaaaactttcgtgaagttttcaggaacaattctttccctttaaata |
82 |
Q |
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| T |
1862063 |
agtaacgagatttgattggtctaaaagagtttcgaaaagctttcgggaacaattatttccctttaaata |
1862131 |
T |
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