View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9269_low_17 (Length: 231)

Name: NF9269_low_17
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9269_low_17
NF9269_low_17
[»] chr2 (2 HSPs)
chr2 (1-212)||(42692141-42692352)
chr2 (13-197)||(42689508-42689692)
[»] chr8 (18 HSPs)
chr8 (16-212)||(6262215-6262411)
chr8 (8-196)||(6273440-6273628)
chr8 (9-179)||(6362131-6362301)
chr8 (9-179)||(6351246-6351416)
chr8 (134-179)||(6368906-6368951)
chr8 (134-179)||(6389888-6389933)
chr8 (134-179)||(7457987-7458032)
chr8 (134-179)||(7470389-7470434)
chr8 (9-65)||(6287822-6287878)
chr8 (136-179)||(6423163-6423206)
chr8 (10-176)||(6320339-6320505)
chr8 (10-176)||(6330801-6330967)
chr8 (134-183)||(6456158-6456207)
chr8 (134-196)||(6287691-6287753)
chr8 (136-194)||(6449680-6449738)
chr8 (11-65)||(7458101-7458155)
chr8 (11-65)||(7470503-7470557)
chr8 (134-179)||(6409137-6409182)
[»] chr5 (1 HSPs)
chr5 (134-196)||(9606276-9606338)
[»] chr1 (1 HSPs)
chr1 (55-183)||(36926276-36926404)
[»] chr7 (1 HSPs)
chr7 (55-99)||(46709271-46709315)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 42692352 - 42692141
Alignment:
Q  1 atacttagacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692352 atacttagacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaag 42692253  T
Q  101 ctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42692252 ctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtattcctacggaggtttaat 42692153  T
Q  201 attaaaccgtcc 212  Q
    ||||||||||||    
T  42692152 attaaaccgtcc 42692141  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 42689508 - 42689692
Alignment:
Q  13 gattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagc 112  Q
    |||||||| || |||  ||||||||||||| | ||||||   ||||| ||||||  |||| || ||||||||||||| ||| ||||| | | ||||||||    
T  42689508 gattctgagcttcaacattggtggaaagaagttgtagagaaaggtcatggtgatttgaaagacaagccatggtggcccaagttgcaaacacttgaagagc 42689607  T
Q  113 tagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggttt 197  Q
    | || |||| ||||||||   |||||||||  |||||||| || ||||||||||||||||||||||| ||| | ||||| |||||    
T  42689608 ttgttgaagcttgcactatcatcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttt 42689692  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 6262411 - 6262215
Alignment:
Q  16 tctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagctag 115  Q
    |||||||||||| |||||||||||||| | ||||| || ||||| ||||| |||||| |||||||||||||||| || |||||| |||| |||||| |      
T  6262411 tctgaactccaatcttggtggaaagaagttgtagaagtgggtcatggtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttga 6262312  T
Q  116 tcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtcc 212  Q
    |  ||||||||| || | ||||||||| ||||||||||||||| |||||||||||||||||||| ||| | || |||||||| ||||||||||||||    
T  6262311 ttcaagtttgcagtattatcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtcc 6262215  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 6273628 - 6273440
Alignment:
Q  8 gacaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtga 107  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||   |||||| |    |||||||  |||||||||| ||||       
T  6273628 gacaagattctgaactccaagcattttggaaagaacttgtagaggttggtcacggtgacttgaaaaatgctaaatggtgggttaagatgcaaactcgcac 6273529  T
Q  108 agagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtt 196  Q
    |||| |  | ||   |||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||| ||||    
T  6273528 agagttgattgactcttgcactaccctcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggtt 6273440  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 6362301 - 6362131
Alignment:
Q  9 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaa 108  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||   ||| || |   ||||||||  |||||||||| |||||||     
T  6362301 acaagattctgaactccaagcattctggaaagaacttgtagaggtcggtcatggtgacttgaagaatgctacatggtggtttaagatgcaaactcgtgag 6362202  T
Q  109 gagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||| |  | |||| |||||| ||  ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  6362201 gagttgattgaagcttgcaccaccctcatatggattgcttcagcacttcatgcagcagttaattttggaca 6362131  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 6351416 - 6351246
Alignment:
Q  9 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaa 108  Q
    ||||||| ||||||||||||| |  ||||| ||||| |||||||||||||| |||||   ||| || |   ||||||||  |||||||||| | ||||||    
T  6351416 acaagatgctgaactccaagcattctggaaggaacttgtagaggttggtcatggtgacctgaagaatgccacatggtggtttaagatgcaaacccgtgaa 6351317  T
Q  109 gagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||| |  |||||| || ||| |   | ||||||||||||||||| ||||| |||||||||||||| |||||    
T  6351316 gagttgatcgaagcttccaccatccttatatggattgcttcagcacttcatgcagctgttaatttcggaca 6351246  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 6368951 - 6368906
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6368951 tcatatggattgcttcagcacttcatgcagctgttaattttggaca 6368906  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 6389933 - 6389888
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6389933 tcatatggattgcttcagcacttcatgcagctgttaattttggaca 6389888  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 7458032 - 7457987
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7458032 tcatatggattgcttcagcacttcatgcagctgttaattttggaca 7457987  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 7470434 - 7470389
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7470434 tcatatggattgcttcagcacttcatgcagctgttaattttggaca 7470389  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6287878 - 6287822
Alignment:
Q  9 acaagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 65  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  6287878 acaagattctgaactccaagcattctggaaagaacttgtagaggtaggtcacggtga 6287822  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 6423206 - 6423163
Alignment:
Q  136 atatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||    
T  6423206 atatggattgcttcagcacttcatgcagctgttaattttggaca 6423163  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 6320505 - 6320339
Alignment:
Q  10 caagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaag 109  Q
    |||||||||||||| ||||| |  |||| |||| | |||||||| ||||| ||||||  ||| || |   ||||||||  |||||||||| || ||  ||    
T  6320505 caagattctgaactgcaagcattttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacag 6320406  T
Q  110 agctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttgg 176  Q
    || |  | |||| ||||||||   ||||||||||||||||||| | ||| |||||||||||||||||    
T  6320405 agttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttgg 6320339  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 6330967 - 6330801
Alignment:
Q  10 caagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaag 109  Q
    |||||||||||||| ||||| |  |||| |||| | |||||||| ||||| ||||||  ||| || |   ||||||||  |||||||||| || ||  ||    
T  6330967 caagattctgaactgcaagcattttggagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacag 6330868  T
Q  110 agctagtcgaagtttgcactactgtcatatggattgcttcagctcttcacgcagctgttaattttgg 176  Q
    || |  | |||| ||||||||   ||||||||||||||||||| | ||| |||||||||||||||||    
T  6330867 agttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttgg 6330801  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 6456207 - 6456158
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtat 183  Q
    ||||||||| ||||||||||||||| ||||| ||||| ||||||||||||    
T  6456207 tcatatggactgcttcagctcttcatgcagcagttaactttggacagtat 6456158  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 6287753 - 6287691
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtt 196  Q
    |||||||||||||||| || ||||| || ||||||||||||||||| ||| | ||||| ||||    
T  6287753 tcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgtacggtggtt 6287691  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 6449738 - 6449680
Alignment:
Q  136 atatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggagg 194  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||| ||| | ||||||||    
T  6449738 atatggactgcttctgctcttcatgcagctgttaatttcggacaatatccttacggagg 6449680  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 7458155 - 7458101
Alignment:
Q  11 aagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 65  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||    
T  7458155 aagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtga 7458101  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 7470557 - 7470503
Alignment:
Q  11 aagattctgaactccaagcttggtggaaagaactcgtagaggttggtcacggtga 65  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| ||||| |||||    
T  7470557 aagattctgaactccaagcattttggaaagaacttgtagaggtgggtcatggtga 7470503  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 6409182 - 6409137
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggaca 179  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  6409182 tcatttggatggcttcagcacttcatgcagctgttaattttggaca 6409137  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 9606276 - 9606338
Alignment:
Q  134 tcatatggattgcttcagctcttcacgcagctgttaattttggacagtattcctacggaggtt 196  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||| ||| | || |||||||    
T  9606276 tcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggtt 9606338  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 36926276 - 36926404
Alignment:
Q  55 ggtcacggtgataagaaaaacgagccatggtggcctaagatgcaagctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctc 154  Q
    ||||| ||||| |||||| | ||||| |||||||| ||||||||  |||  ||||||||  | |||  |||||||| | | |||||||||||||||||||    
T  36926276 ggtcatggtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctc 36926375  T
Q  155 ttcacgcagctgttaattttggacagtat 183  Q
    | || || || || || ||||||||||||    
T  36926376 tccatgctgcagtcaactttggacagtat 36926404  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 46709315 - 46709271
Alignment:
Q  55 ggtcacggtgataagaaaaacgagccatggtggcctaagatgcaa 99  Q
    |||||||| || |||||||||||||| |||||||| |||||||||    
T  46709315 ggtcacggcgacaagaaaaacgagccttggtggccaaagatgcaa 46709271  T

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