View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_2 (Length: 648)
Name: NF9269_low_2
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 10613783 - 10614390
Alignment:
| Q |
18 |
ggaagaaactaaatcatgactgaagtaccgtgtatcttaatagaagttgcttaagtttagaagaaaaatataacatctgatttgctcaagaactcgagat |
117 |
Q |
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| T |
10613783 |
ggaagaaactaaatcatgactgaagtaccgtgtatcttaatagaagttgcttaagtttagaagaaaaatataacatctgatttgctcaagaactcgagat |
10613882 |
T |
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| Q |
118 |
ctttccatttaaaaagaaaaactttgttcattaaatatagcatacacattcatatgcctgcctcaaatcattggtttctccatcagagctgaaatcaacc |
217 |
Q |
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| T |
10613883 |
ctttccatttaaaaagaaaaactttgttcattaaatatagcatacacattcatatgcctacctcaaatcattggtttctccatcagagctgaaatcaacc |
10613982 |
T |
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| Q |
218 |
acacatcctttcgaaccttaggatcaagtttcattccaacatgccatcgcagtttattgaacccaactcgatccaacatcggcacataagttttgttgag |
317 |
Q |
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| T |
10613983 |
acacatcctttcgaaccttaggatcaagtttcattccaacatgccatcgcagtttattgaacccaactcgatccaacatcggcacataagttttgttgag |
10614082 |
T |
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| Q |
318 |
ctgtgaaccaaagcagaagaaatggtcaagccagaatagtccacctggcctcaaaaccctgtatatatcatacaacacaaactcaagcatggtatctggc |
417 |
Q |
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| T |
10614083 |
ctgtgaaccaaagcagaagaaatggtcaagccagaatagtccacctggcctcaaaaccctgtatatatcatacaacacaaactcaagcatggtatctggc |
10614182 |
T |
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| Q |
418 |
atccagttgccaatgacatccatagagtgcacaatatccaacgtgttttcgaagaatggaaacctttgagaaatgctaatatgcattggtatcaaacccc |
517 |
Q |
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| T |
10614183 |
atccagttgccaatgacatccatagagtgcacaatatccaacgtgttttcgaagaatggaaacctttgagaaatgctaatatgcattggtatcaaacccc |
10614282 |
T |
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| Q |
518 |
ttgatgcaaccatgttgttgaatggaccatccaaattcagtgtacttgtaatgactgtcacatttctttccctcatccttgcagcaaatgttccacttcc |
617 |
Q |
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| T |
10614283 |
ttgatgcaaccatgttgttgaatggaccatccaaattcagtgtacttgtaatgaccgtcacatttctttccctcatccttgcagcaaatgttccacttcc |
10614382 |
T |
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| Q |
618 |
aacaccaa |
625 |
Q |
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| T |
10614383 |
accaccaa |
10614390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 134 - 625
Target Start/End: Original strand, 10610469 - 10610960
Alignment:
| Q |
134 |
aaaaactttgttcattaaatatagcatacacattcatatgcctgcctcaaatcattggtttctccatcagagctgaaatcaaccacacatcctttcgaac |
233 |
Q |
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| T |
10610469 |
aaaaactttgttcattaaatatagcatacaaattcatatgtcttcctcaaatcattggtttttccaacagagctgaaatgtaccacacattcttttgaac |
10610568 |
T |
|
| Q |
234 |
cttaggatcaagtttcattccaacatgccatcgcagtttattgaacccaactcgatccaacatcggcacataagttttgttgagctgtgaaccaaagcag |
333 |
Q |
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| T |
10610569 |
cacagaatcaactttcattccaacatgccatcgcagtttatggaatccaactctatccaacatcggcacataagtttttttgatctgtgaagcaaagcag |
10610668 |
T |
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| Q |
334 |
aagaaatggtcaagccagaatagtccacctggcctcaaaaccctgtatatatcatacaacacaaactcaagcatggtatctggcatccagttgccaatga |
433 |
Q |
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| T |
10610669 |
aagaaatgatcaagccagaatagacctcctggcctcaacaccctgtatatatcatacaacacaaactcaaccatggtatctggcatccaattgccaatga |
10610768 |
T |
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| Q |
434 |
catccatagagtgcacaatatccaacgtgttttcgaagaatggaaacctttgagaaatgctaatatgcattggtatcaaaccccttgatgcaaccatgtt |
533 |
Q |
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| T |
10610769 |
catccctagaatgcacaatatccaacgtgttgtcgaagaacggaaacctttgagatatgctaatatacatcgatattaaaccccttgatgcaatcatgtt |
10610868 |
T |
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| Q |
534 |
gttgaatggaccatccaaattcagtgtacttgtaatgactgtcacatttctttccctcatccttgcagcaaatgttccacttccaacaccaa |
625 |
Q |
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|||||||||||||||||||||||| || |||||||||| |||||| |||| ||| ||||| |||||||||||||||||| | ||| |||||| |
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| T |
10610869 |
gttgaatggaccatccaaattcagcgtgcttgtaatgattgtcacgtttcgttctctcattcttgcagcaaatgttccagtcccaccaccaa |
10610960 |
T |
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