View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9269_low_3 (Length: 640)

Name: NF9269_low_3
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9269_low_3
NF9269_low_3
[»] chr4 (3 HSPs)
chr4 (272-499)||(16925961-16926187)
chr4 (14-273)||(13924382-13924640)
chr4 (506-602)||(16925841-16925937)
[»] chr6 (6 HSPs)
chr6 (14-231)||(4748776-4748993)
chr6 (147-231)||(15652485-15652569)
chr6 (144-202)||(15888483-15888541)
chr6 (147-202)||(15670350-15670405)
chr6 (144-202)||(15888049-15888107)
chr6 (243-273)||(15888570-15888600)
[»] chr3 (6 HSPs)
chr3 (14-273)||(10027114-10027366)
chr3 (144-202)||(32963186-32963244)
chr3 (144-187)||(36144061-36144104)
chr3 (243-273)||(6445361-6445391)
chr3 (243-273)||(22505408-22505438)
chr3 (243-273)||(42392265-42392295)
[»] chr8 (5 HSPs)
chr8 (14-231)||(4928937-4929152)
chr8 (243-274)||(25061060-25061091)
chr8 (243-273)||(15922458-15922488)
chr8 (243-273)||(17895217-17895247)
chr8 (144-182)||(21581047-21581085)
[»] chr1 (1 HSPs)
chr1 (279-401)||(23586061-23586182)
[»] chr7 (2 HSPs)
chr7 (144-189)||(18269361-18269406)
chr7 (144-189)||(18268926-18268971)
[»] chr5 (1 HSPs)
chr5 (243-273)||(29856219-29856249)
[»] chr2 (1 HSPs)
chr2 (243-273)||(5244822-5244852)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 272 - 499
Target Start/End: Complemental strand, 16926187 - 16925961
Alignment:
Q  272 attggtctattatcttacatatttaagttttttgaatggttccattcattccttttcgtatttaaatagcaagtcatggcatgatttacctttaaacaca 371  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||| ||||||    
T  16926187 attggtctattatcttacatatttaagtttttt-aatggttccatccattccttttcgtatttaagtagcaagtcatggcatgtttcacctttgaacaca 16926089  T
Q  372 tcaacctaacattccatgataagttaacatattataactagagtacacatgttataaccttaaatgaatttaagcgttcgtagattaccgcaaatgaagg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16926088 tcaacctaacattccatgataagttaacatattataactagagtacacatgttataaccttaaatgaatttaagcattcgtagattaccgcaaatgaagg 16925989  T
Q  472 tgaaagacactaaacaactttcaatgta 499  Q
    ||||||||||||||||||||||||||||    
T  16925988 tgaaagacactaaacaactttcaatgta 16925961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 13924382 - 13924640
Alignment:
Q  14 ataattctaaataattgttaattatctctttttcaatgcataattaaggcaaataattcttccttcaaaataaaaataattccttaaaatgaatcaatgc 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||    
T  13924382 ataattctaaataattgttaattatctctttttcaatgcatagttaaggcaaataattcttccttcaaaataaaaaatattccttaaaatgaatcattgc 13924481  T
Q  114 gattatcaaatattcctaaaaatattccttaacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaa 213  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||    
T  13924482 gattatcaaatatt-ataaaaatattccttaaaatgttggtgtgtagatgaaagaaaatattaaatgcaattatgattctttcactaattctttcactaa 13924580  T
Q  214 taggatgccaagtgtactatnnnnnnnnntagtgcaaatatatataataaagataaagat 273  Q
    ||| |||||||||||||| |         |||||||||||||||||||||||||||||||    
T  13924581 tagtatgccaagtgtacttttaaaaaaaatagtgcaaatatatataataaagataaagat 13924640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 602
Target Start/End: Complemental strand, 16925937 - 16925841
Alignment:
Q  506 tttttcacatacaagtgtggtaatttcatagtatttaannnnnnnnnngttataaacttagccnnnnnnntatcacaaatattcaactaagtaccaa 602  Q
    ||||||||||||||||||| ||||||||||||||||||          |||||||||||||||       |||||||||||||||||||||||||||    
T  16925937 tttttcacatacaagtgtgataatttcatagtatttaattttttttttgttataaacttagccaaaaaaatatcacaaatattcaactaagtaccaa 16925841  T

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Target: chr6 (Bit Score: 178; Significance: 1e-95; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 4748993 - 4748776
Alignment:
Q  14 ataattctaaataattgttaattatctctttttcaatgcataattaaggcaaataattcttccttcaaaataaaaataattccttaaaatgaatcaatgc 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||    
T  4748993 ataattctaaataattgttaattatctctttttcaatgcatagttaaggcaaataattcttccttcaaaataaaaaatattccttaaaatgaatcattgc 4748894  T
Q  114 gattatcaaatattcctaaaaatattccttaacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaa 213  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||| ||||    
T  4748893 aattatcaaatattcctaaaaatattccttaacatgttggtgtgtagatgaaagaaaatattaaatgcaattatgattctttcactaattctttcgctaa 4748794  T
Q  214 taggatgccaagtgtact 231  Q
    ||||||||||||||||||    
T  4748793 taggatgccaagtgtact 4748776  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 15652569 - 15652485
Alignment:
Q  147 atgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaataggatgccaagtgtact 231  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| |||||||    
T  15652569 atgttggtgtgtagatgaaagaaaacattaaatgcaattatgattctttcactaattctttcactaataggttgccacgtgtact 15652485  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 15888483 - 15888541
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaat 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||    
T  15888483 aacatgttggtgtgtagatgaaagaaaatattaaatgcaattatgattctttcactaat 15888541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 15670405 - 15670350
Alignment:
Q  147 atgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaat 202  Q
    ||||||||||||| |||||||||||||||||||||||||||||   ||||||||||    
T  15670405 atgttggtgtgtaaatgaaagaaaacattaaatgcaattatgattctttcactaat 15670350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 15888049 - 15888107
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaat 202  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||   ||||||||||    
T  15888049 aacatgttggtgtgtagatgaaaaaaaacattaaatgcacttatgattctttcactaat 15888107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 15888570 - 15888600
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  15888570 tagtgcaaatatatataataaagataaagat 15888600  T

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Target: chr3 (Bit Score: 152; Significance: 4e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 10027114 - 10027366
Alignment:
Q  14 ataattctaaataattgttaattatctctttttcaatgcataattaaggcaaataattcttccttcaaaataaaaataattccttaaaatgaatcaatgc 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  |||||||||||||||||| |||    
T  10027114 ataattctaaataattgttaattatctctttttcaatgcatagttaaggcaaataattcttctttcaaaataaaaaatattccttaaaatgaatcactgc 10027213  T
Q  114 gattatcaaatattcctaaaaatattccttaacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaa 213  Q
    |||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10027214 gattatcaaatattcct------------taacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaa 10027301  T
Q  214 tagg-atgccaagtgtactatnnnnnnnnn----tagtgcaaatatatataataaagataaagat 273  Q
    |||| ||||||||||||||||             |||||||||||||||||||||||||||||||    
T  10027302 tagggatgccaagtgtactatcaaaaaaaaaaaatagtgcaaatatatataataaagataaagat 10027366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 32963244 - 32963186
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  32963244 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgattctttcactaat 32963186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 36144061 - 36144104
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattat 187  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||    
T  36144061 aacatgttggtgtgtagatgaaaaaaaatattaaatgcacttat 36144104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 6445361 - 6445391
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  6445361 tagtgcaaatatatataataaagataaagat 6445391  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 22505408 - 22505438
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  22505408 tagtgcaaatatatataataaagataaagat 22505438  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 42392295 - 42392265
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  42392295 tagtgcaaatatatataataaagataaagat 42392265  T

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Target: chr8 (Bit Score: 150; Significance: 6e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 4929152 - 4928937
Alignment:
Q  14 ataattctaaataattgttaattatctctttttcaatgcataattaaggcaaataattcttccttcaaaataaaaataattccttaaaatgaatcaatgc 113  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||    
T  4929152 ataattctaaataattgttaattatctcgttttcaatgcatagttaaggcaaataattcttcctttaaaataaaaaatattccttaaaatgaatcattgc 4929053  T
Q  114 gattatcaaatattcctaaaaatattccttaacatgttggtgtgtagatgaaagaaaacattaaatgcaattatgaaaatttcactaattctttcactaa 213  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||   ||||||||||||||| |||||    
T  4929052 gattatcaaatatt-ataaaaatattccttaaaatgttggtgtgtagat-aaagaaaatattaaatgcaattatgattctttcactaattcttttactaa 4928955  T
Q  214 taggatgccaagtgtact 231  Q
    ||||||||||||||||||    
T  4928954 taggatgccaagtgtact 4928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 25061091 - 25061060
Alignment:
Q  243 tagtgcaaatatatataataaagataaagatt 274  Q
    ||||||||||||||||||||||||||||||||    
T  25061091 tagtgcaaatatatataataaagataaagatt 25061060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 15922488 - 15922458
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  15922488 tagtgcaaatatatataataaagataaagat 15922458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 17895217 - 17895247
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  17895217 tagtgcaaatatatataataaagataaagat 17895247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 21581085 - 21581047
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgca 182  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  21581085 aacatgttggtgtgtagatgaaagaaaatattagatgca 21581047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 279 - 401
Target Start/End: Complemental strand, 23586182 - 23586061
Alignment:
Q  279 tattatcttacatatttaagttttttgaatggttccattcattccttttcgtatttaaatagcaagtcatggcatgatttacctttaaacacatcaacct 378  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||   || |||||||||  |||||||||||||||| || ||| || |||||||||||||    
T  23586182 tattatcttacatatttgagtcttttgaatggttccatccattgggttgcgtatttaagcagcaagtcatggcatgtttcaccattgaacacatcaacct 23586083  T
Q  379 aacattccatgataagttaacat 401  Q
    |||||||||| ||||||||||||    
T  23586082 aacattccat-ataagttaacat 23586061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 18269406 - 18269361
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18269406 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatga 18269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 18268971 - 18268926
Alignment:
Q  144 aacatgttggtgtgtagatgaaagaaaacattaaatgcaattatga 189  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18268971 aacatgttggtttgtagatgaaagaaaacattaaatgcaattatga 18268926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 29856249 - 29856219
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  29856249 tagtgcaaatatatataataaagataaagat 29856219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 5244822 - 5244852
Alignment:
Q  243 tagtgcaaatatatataataaagataaagat 273  Q
    |||||||||||||||||||||||||||||||    
T  5244822 tagtgcaaatatatataataaagataaagat 5244852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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