View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_4 (Length: 478)
Name: NF9269_low_4
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 14576652 - 14577116
Alignment:
| Q |
1 |
cttgctataccaatttaagaaggttagattgatttggaaggtgttgaatcatcaaggaaccttgttgcaacaattgtgtcgtattttgaagatnnnnnnn |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14576652 |
cttgctctaccaatttaagaaggttagattgatttggaaggtgttgaatcatcaaggaaccttgttgcaacaattgtgtcttattttgaagataaaaaaa |
14576751 |
T |
|
| Q |
101 |
gagactatgaaaagctagaaaccccaatctcttctgaagatgaaattagtaagagaaattttcgtaagtttaagttgtccgaaaatgatgagcaagttag |
200 |
Q |
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| T |
14576752 |
gagactaggaaaatctagaaaccccaatctcttctaaagatgaaattagtaagagaaattttcgtaagtttaagttgtccgaaaatgatgagcaagttag |
14576851 |
T |
|
| Q |
201 |
gtatcatgtaggacaaatatttgaaaatgttgagttagttaaaacatctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaat |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576852 |
gtatcatgtaggaaaaatatttgaaaatgttgagttagttaaa-catctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaat |
14576950 |
T |
|
| Q |
301 |
gagaggnnnnnnnttgttgttaagtgcacgattgaatgtccatattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagtta |
400 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576951 |
gagaggaaaaaaattgttgttaagtgcacgattgagtgtccatattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagtta |
14577050 |
T |
|
| Q |
401 |
taagcttgctcatacatgtcatagaactgcaaagctcaagcaatgcaaaacaaagttgatgtccat |
466 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14577051 |
taaggttgctcatacatgtcatagaactgcaaagctcaagcaatgcaaaacaaagttgatggccat |
14577116 |
T |
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