View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_5 (Length: 400)
Name: NF9269_low_5
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 17758175 - 17758542
Alignment:
| Q |
18 |
tctctcactctcaaattgggtatttgattccattgaatcaaaattccgaagaaaaagaaaaagcttcaactccaaaattaactatctcagatggcacaaa |
117 |
Q |
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| T |
17758175 |
tctctcactctcaaattgggtatttgattccattgaatccaaattccgaagaaaaagaaaaagcttcaactccaaaattaactatctcagatggcacaaa |
17758274 |
T |
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| Q |
118 |
tatcattggaagaaacaacgttcccgtcaatgacaagaggcttagccgtaaacatctcaccataaccgcttccgccgatggcactgctaatttgcatgtg |
217 |
Q |
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| T |
17758275 |
tatcattggaagaaacaacgttcccgtcaatgacaagaggcttagccgtaaacatctcaccataaccgcttccgccgatggcactgcaaatttgcatgtg |
17758374 |
T |
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| Q |
218 |
gtattattttagttctacannnnnnnaacaatatatgttagtttaatttgtattagaatattaccgacatttctgatcgaaagcgtaccttgtgtctgac |
317 |
Q |
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| T |
17758375 |
gtattattttagttctacatttttttaacaatatatgttagtttaatttgtattagaatactaccgacatttctgatcgaaagcgtaccttgtgtctgac |
17758474 |
T |
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| Q |
318 |
acatgtaaatgttgaacacgacactaacacatttgattacattcaatttccgtccgggctagtgtctg |
385 |
Q |
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| T |
17758475 |
acatgtaagtgtttaacatgatactaacacatttgattacattctatttacgtccgtgctagtgtctg |
17758542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 22636503 - 22636471
Alignment:
| Q |
333 |
acacgacactaacacatttgattacattcaatt |
365 |
Q |
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| T |
22636503 |
acacgacaccaacacatttgattacattcaatt |
22636471 |
T |
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